Gene : Bradi2g27880 B. distachyon v3.1
Defline:  (1 of 1) PTHR11614:SF88 - ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN Genomic Order:  3573
Name:  ? Bradi2g27880 Secondary Identifier:  ? PAC:32781574
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7420 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g27880 0.5kb upstream 0.5kb upstream 5499 true Bd2: 26806950-26812448 Brachypodium distachyon
Bradi2g27880 0.5kb upstream 0.5kb upstream 500 false Bd2: 26811949-26812448 Brachypodium distachyon
Bradi2g27880 0.5kb downstream 0.5kb downstream 5499 true Bd2: 26806450-26811948 Brachypodium distachyon
Bradi2g27880 0.5kb downstream 0.5kb downstream 500 false Bd2: 26806450-26806949 Brachypodium distachyon
Bradi2g27880 1.0kb upstream 1.0kb upstream 5999 true Bd2: 26806950-26812948 Brachypodium distachyon
Bradi2g27880 1.0kb upstream 1.0kb upstream 1000 false Bd2: 26811949-26812948 Brachypodium distachyon
Bradi2g27880 1.0kb downstream 1.0kb downstream 5999 true Bd2: 26805950-26811948 Brachypodium distachyon
Bradi2g27880 1.0kb downstream 1.0kb downstream 1000 false Bd2: 26805950-26806949 Brachypodium distachyon
Bradi2g27880 2.0kb upstream 2.0kb upstream 6999 true Bd2: 26806950-26813948 Brachypodium distachyon
Bradi2g27880 2.0kb upstream 2.0kb upstream 2000 false Bd2: 26811949-26813948 Brachypodium distachyon
Bradi2g27880 2.0kb downstream 2.0kb downstream 6999 true Bd2: 26804950-26811948 Brachypodium distachyon
Bradi2g27880 2.0kb downstream 2.0kb downstream 2000 false Bd2: 26804950-26806949 Brachypodium distachyon
Bradi2g27880 5.0kb upstream 5.0kb upstream 9999 true Bd2: 26806950-26816948 Brachypodium distachyon
Bradi2g27880 5.0kb upstream 5.0kb upstream 5000 false Bd2: 26811949-26816948 Brachypodium distachyon
Bradi2g27880 5.0kb downstream 5.0kb downstream 9999 true Bd2: 26801950-26811948 Brachypodium distachyon
Bradi2g27880 5.0kb downstream 5.0kb downstream 5000 false Bd2: 26801950-26806949 Brachypodium distachyon
Bradi2g27880 10.0kb upstream 10.0kb upstream 14999 true Bd2: 26806950-26821948 Brachypodium distachyon
Bradi2g27880 10.0kb upstream 10.0kb upstream 10000 false Bd2: 26811949-26821948 Brachypodium distachyon
Bradi2g27880 10.0kb downstream 10.0kb downstream 14999 true Bd2: 26796950-26811948 Brachypodium distachyon
Bradi2g27880 10.0kb downstream 10.0kb downstream 10000 false Bd2: 26796950-26806949 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578757 5269 Grass View MSA
122042600 5273 Angiosperm View MSA
121350082 5274 Embryophyte View MSA
123428617 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.431        
cufflinks 0.53        
cufflinks 0.658        
cufflinks 0.43        
cufflinks 0.491        
cufflinks 0.552        
cufflinks 0.585        
cufflinks 0.561        
cufflinks 0.592        
cufflinks 0.487        
cufflinks 0.426        
cufflinks 0.554        
cufflinks 0.513        
cufflinks 0.222       Low
cufflinks 0.582        
cufflinks 0.617        
cufflinks 0.605        
cufflinks 2.902       High
cufflinks 0.425        
cufflinks 1.562       High
cufflinks 1.342       High
cufflinks 0.747        
cufflinks 0.672        
cufflinks 0.526        
cufflinks 0.399        
cufflinks 0.737        
cufflinks 0.437        
cufflinks 0.52        
cufflinks 0.653        
cufflinks 1.033        

0 Strain