Gene : Bradi2g25560 B. distachyon v3.1
Defline:  (1 of 1) PTHR22763//PTHR22763:SF80 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  3244
Name:  ? Bradi2g25560 Secondary Identifier:  ? PAC:32781027
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7511 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g25560 0.5kb upstream 0.5kb upstream 2693 true Bd2: 23631635-23634327 Brachypodium distachyon
Bradi2g25560 0.5kb upstream 0.5kb upstream 500 false Bd2: 23631635-23632134 Brachypodium distachyon
Bradi2g25560 0.5kb downstream 0.5kb downstream 2693 true Bd2: 23632135-23634827 Brachypodium distachyon
Bradi2g25560 0.5kb downstream 0.5kb downstream 500 false Bd2: 23634328-23634827 Brachypodium distachyon
Bradi2g25560 1.0kb upstream 1.0kb upstream 3193 true Bd2: 23631135-23634327 Brachypodium distachyon
Bradi2g25560 1.0kb upstream 1.0kb upstream 1000 false Bd2: 23631135-23632134 Brachypodium distachyon
Bradi2g25560 1.0kb downstream 1.0kb downstream 3193 true Bd2: 23632135-23635327 Brachypodium distachyon
Bradi2g25560 1.0kb downstream 1.0kb downstream 1000 false Bd2: 23634328-23635327 Brachypodium distachyon
Bradi2g25560 2.0kb upstream 2.0kb upstream 4193 true Bd2: 23630135-23634327 Brachypodium distachyon
Bradi2g25560 2.0kb upstream 2.0kb upstream 2000 false Bd2: 23630135-23632134 Brachypodium distachyon
Bradi2g25560 2.0kb downstream 2.0kb downstream 4193 true Bd2: 23632135-23636327 Brachypodium distachyon
Bradi2g25560 2.0kb downstream 2.0kb downstream 2000 false Bd2: 23634328-23636327 Brachypodium distachyon
Bradi2g25560 5.0kb upstream 5.0kb upstream 7193 true Bd2: 23627135-23634327 Brachypodium distachyon
Bradi2g25560 5.0kb upstream 5.0kb upstream 5000 false Bd2: 23627135-23632134 Brachypodium distachyon
Bradi2g25560 5.0kb downstream 5.0kb downstream 7193 true Bd2: 23632135-23639327 Brachypodium distachyon
Bradi2g25560 5.0kb downstream 5.0kb downstream 5000 false Bd2: 23634328-23639327 Brachypodium distachyon
Bradi2g25560 10.0kb upstream 10.0kb upstream 12193 true Bd2: 23622135-23634327 Brachypodium distachyon
Bradi2g25560 10.0kb upstream 10.0kb upstream 10000 false Bd2: 23622135-23632134 Brachypodium distachyon
Bradi2g25560 10.0kb downstream 10.0kb downstream 12193 true Bd2: 23632135-23644327 Brachypodium distachyon
Bradi2g25560 10.0kb downstream 10.0kb downstream 10000 false Bd2: 23634328-23644327 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572256 5269 Grass View MSA
122041904 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121309901 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low Low
cufflinks 0.027     Low  
cufflinks 0.055     Low  
cufflinks 0.015     Low Low
cufflinks 0.108        
cufflinks 0.039     Low  
cufflinks 0.025     Low  
cufflinks 0.037     Low  
cufflinks 0.046     Low  
cufflinks 0.106     Low  
cufflinks 0.047     Low  
cufflinks 0.15       High
cufflinks 0.024     Low  
cufflinks 0.025     Low  
cufflinks 0.067     Low  
cufflinks 0.064     Low  
cufflinks 0.069     Low  
cufflinks 0.084     Low  
cufflinks 0.061     Low  
cufflinks 0.382       High
cufflinks 0.285       High
cufflinks 0.027     Low  
cufflinks 0.037     Low  
cufflinks 0.067     Low  
cufflinks 0.061     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low Low
cufflinks 0.046     Low  
cufflinks 0.058     Low  
cufflinks 0.14       High

0 Strain