Gene : Bradi2g39980 B. distachyon v3.1
Defline:  (1 of 2) K12198 - charged multivesicular body protein 5 (CHMP5, VPS60) Genomic Order:  4789
Name:  ? Bradi2g39980 Secondary Identifier:  ? PAC:32781413
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g39980 0.5kb upstream 0.5kb upstream 3733 true Bd2: 39697297-39701029 Brachypodium distachyon
Bradi2g39980 0.5kb upstream 0.5kb upstream 500 false Bd2: 39700530-39701029 Brachypodium distachyon
Bradi2g39980 0.5kb downstream 0.5kb downstream 3733 true Bd2: 39696797-39700529 Brachypodium distachyon
Bradi2g39980 0.5kb downstream 0.5kb downstream 500 false Bd2: 39696797-39697296 Brachypodium distachyon
Bradi2g39980 1.0kb upstream 1.0kb upstream 4233 true Bd2: 39697297-39701529 Brachypodium distachyon
Bradi2g39980 1.0kb upstream 1.0kb upstream 1000 false Bd2: 39700530-39701529 Brachypodium distachyon
Bradi2g39980 1.0kb downstream 1.0kb downstream 4233 true Bd2: 39696297-39700529 Brachypodium distachyon
Bradi2g39980 1.0kb downstream 1.0kb downstream 1000 false Bd2: 39696297-39697296 Brachypodium distachyon
Bradi2g39980 2.0kb upstream 2.0kb upstream 5233 true Bd2: 39697297-39702529 Brachypodium distachyon
Bradi2g39980 2.0kb upstream 2.0kb upstream 2000 false Bd2: 39700530-39702529 Brachypodium distachyon
Bradi2g39980 2.0kb downstream 2.0kb downstream 5233 true Bd2: 39695297-39700529 Brachypodium distachyon
Bradi2g39980 2.0kb downstream 2.0kb downstream 2000 false Bd2: 39695297-39697296 Brachypodium distachyon
Bradi2g39980 5.0kb upstream 5.0kb upstream 8233 true Bd2: 39697297-39705529 Brachypodium distachyon
Bradi2g39980 5.0kb upstream 5.0kb upstream 5000 false Bd2: 39700530-39705529 Brachypodium distachyon
Bradi2g39980 5.0kb downstream 5.0kb downstream 8233 true Bd2: 39692297-39700529 Brachypodium distachyon
Bradi2g39980 5.0kb downstream 5.0kb downstream 5000 false Bd2: 39692297-39697296 Brachypodium distachyon
Bradi2g39980 10.0kb upstream 10.0kb upstream 13233 true Bd2: 39697297-39710529 Brachypodium distachyon
Bradi2g39980 10.0kb upstream 10.0kb upstream 10000 false Bd2: 39700530-39710529 Brachypodium distachyon
Bradi2g39980 10.0kb downstream 10.0kb downstream 13233 true Bd2: 39687297-39700529 Brachypodium distachyon
Bradi2g39980 10.0kb downstream 10.0kb downstream 10000 false Bd2: 39687297-39697296 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124582350 5269 Grass View MSA
122046094 5273 Angiosperm View MSA
121350870 5274 Embryophyte View MSA
123426524 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.514     High  
cufflinks 7.466       Low
cufflinks 10.099        
cufflinks 7.809       Low
cufflinks 17.449     High High
cufflinks 7.776       Low
cufflinks 7.738       Low
cufflinks 9.057        
cufflinks 8.268       Low
cufflinks 15.088     High  
cufflinks 14.777     High  
cufflinks 11.169     High  
cufflinks 11.467     High  
cufflinks 11.971     High  
cufflinks 12.166     High  
cufflinks 7.858       Low
cufflinks 11.64     High  
cufflinks 13.355     High  
cufflinks 21.005     High High
cufflinks 19.916     High High
cufflinks 14.578     High  
cufflinks 11.374     High  
cufflinks 9.04        
cufflinks 8.377       Low
cufflinks 8.563        
cufflinks 11.422     High  
cufflinks 15.909     High  
cufflinks 12.658     High  
cufflinks 12.34     High  
cufflinks 11.937     High  

0 Strain