Gene : Bradi2g40030 B. distachyon v3.1
Defline:  (1 of 2) K00914 - phosphatidylinositol 3-kinase (PIK3C3, VPS34) Genomic Order:  4797
Name:  ? Bradi2g40030 Secondary Identifier:  ? PAC:32772235
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6352 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g40030 0.5kb upstream 0.5kb upstream 7277 true Bd2: 39745864-39753140 Brachypodium distachyon
Bradi2g40030 0.5kb upstream 0.5kb upstream 500 false Bd2: 39745864-39746363 Brachypodium distachyon
Bradi2g40030 0.5kb downstream 0.5kb downstream 7277 true Bd2: 39746364-39753640 Brachypodium distachyon
Bradi2g40030 0.5kb downstream 0.5kb downstream 500 false Bd2: 39753141-39753640 Brachypodium distachyon
Bradi2g40030 1.0kb upstream 1.0kb upstream 7777 true Bd2: 39745364-39753140 Brachypodium distachyon
Bradi2g40030 1.0kb upstream 1.0kb upstream 1000 false Bd2: 39745364-39746363 Brachypodium distachyon
Bradi2g40030 1.0kb downstream 1.0kb downstream 7777 true Bd2: 39746364-39754140 Brachypodium distachyon
Bradi2g40030 1.0kb downstream 1.0kb downstream 1000 false Bd2: 39753141-39754140 Brachypodium distachyon
Bradi2g40030 2.0kb upstream 2.0kb upstream 8777 true Bd2: 39744364-39753140 Brachypodium distachyon
Bradi2g40030 2.0kb upstream 2.0kb upstream 2000 false Bd2: 39744364-39746363 Brachypodium distachyon
Bradi2g40030 2.0kb downstream 2.0kb downstream 8777 true Bd2: 39746364-39755140 Brachypodium distachyon
Bradi2g40030 2.0kb downstream 2.0kb downstream 2000 false Bd2: 39753141-39755140 Brachypodium distachyon
Bradi2g40030 5.0kb upstream 5.0kb upstream 11777 true Bd2: 39741364-39753140 Brachypodium distachyon
Bradi2g40030 5.0kb upstream 5.0kb upstream 5000 false Bd2: 39741364-39746363 Brachypodium distachyon
Bradi2g40030 5.0kb downstream 5.0kb downstream 11777 true Bd2: 39746364-39758140 Brachypodium distachyon
Bradi2g40030 5.0kb downstream 5.0kb downstream 5000 false Bd2: 39753141-39758140 Brachypodium distachyon
Bradi2g40030 10.0kb upstream 10.0kb upstream 16777 true Bd2: 39736364-39753140 Brachypodium distachyon
Bradi2g40030 10.0kb upstream 10.0kb upstream 10000 false Bd2: 39736364-39746363 Brachypodium distachyon
Bradi2g40030 10.0kb downstream 10.0kb downstream 16777 true Bd2: 39746364-39763140 Brachypodium distachyon
Bradi2g40030 10.0kb downstream 10.0kb downstream 10000 false Bd2: 39753141-39763140 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583804 5269 Grass View MSA
122044904 5273 Angiosperm View MSA
121346569 5274 Embryophyte View MSA
123428471 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.319       Low
cufflinks 7.064        
cufflinks 8.986        
cufflinks 5.653        
cufflinks 3.284       Low
cufflinks 6.77        
cufflinks 5.807        
cufflinks 5.32        
cufflinks 6.917        
cufflinks 5.862        
cufflinks 8.732     High  
cufflinks 7.41        
cufflinks 7.733     High  
cufflinks 6.377        
cufflinks 3.988       Low
cufflinks 6.951        
cufflinks 4.196       Low
cufflinks 9.442       High
cufflinks 5.735        
cufflinks 8.42        
cufflinks 5.702        
cufflinks 9.908       High
cufflinks 5.676        
cufflinks 6.552        
cufflinks 5.708        
cufflinks 8.855        
cufflinks 8.534        
cufflinks 8.951        
cufflinks 8.593        
cufflinks 6.288        

0 Strain