Gene : Bradi2g37870 B. distachyon v3.1
Defline:  (1 of 1) PTHR11254//PTHR11254:SF327 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE Genomic Order:  4518
Name:  ? Bradi2g37870 Secondary Identifier:  ? PAC:32780316
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7511 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g37870 0.5kb upstream 0.5kb upstream 5980 true Bd2: 37998604-38004583 Brachypodium distachyon
Bradi2g37870 0.5kb upstream 0.5kb upstream 500 false Bd2: 37998604-37999103 Brachypodium distachyon
Bradi2g37870 0.5kb downstream 0.5kb downstream 5980 true Bd2: 37999104-38005083 Brachypodium distachyon
Bradi2g37870 0.5kb downstream 0.5kb downstream 500 false Bd2: 38004584-38005083 Brachypodium distachyon
Bradi2g37870 1.0kb upstream 1.0kb upstream 6480 true Bd2: 37998104-38004583 Brachypodium distachyon
Bradi2g37870 1.0kb upstream 1.0kb upstream 1000 false Bd2: 37998104-37999103 Brachypodium distachyon
Bradi2g37870 1.0kb downstream 1.0kb downstream 6480 true Bd2: 37999104-38005583 Brachypodium distachyon
Bradi2g37870 1.0kb downstream 1.0kb downstream 1000 false Bd2: 38004584-38005583 Brachypodium distachyon
Bradi2g37870 2.0kb upstream 2.0kb upstream 7480 true Bd2: 37997104-38004583 Brachypodium distachyon
Bradi2g37870 2.0kb upstream 2.0kb upstream 2000 false Bd2: 37997104-37999103 Brachypodium distachyon
Bradi2g37870 2.0kb downstream 2.0kb downstream 7480 true Bd2: 37999104-38006583 Brachypodium distachyon
Bradi2g37870 2.0kb downstream 2.0kb downstream 2000 false Bd2: 38004584-38006583 Brachypodium distachyon
Bradi2g37870 5.0kb upstream 5.0kb upstream 10480 true Bd2: 37994104-38004583 Brachypodium distachyon
Bradi2g37870 5.0kb upstream 5.0kb upstream 5000 false Bd2: 37994104-37999103 Brachypodium distachyon
Bradi2g37870 5.0kb downstream 5.0kb downstream 10480 true Bd2: 37999104-38009583 Brachypodium distachyon
Bradi2g37870 5.0kb downstream 5.0kb downstream 5000 false Bd2: 38004584-38009583 Brachypodium distachyon
Bradi2g37870 10.0kb upstream 10.0kb upstream 15480 true Bd2: 37989104-38004583 Brachypodium distachyon
Bradi2g37870 10.0kb upstream 10.0kb upstream 10000 false Bd2: 37989104-37999103 Brachypodium distachyon
Bradi2g37870 10.0kb downstream 10.0kb downstream 15480 true Bd2: 37999104-38014583 Brachypodium distachyon
Bradi2g37870 10.0kb downstream 10.0kb downstream 10000 false Bd2: 38004584-38014583 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574381 5269 Grass View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.188        
cufflinks 0.662       High
cufflinks 0.444       High
cufflinks 0.543       High
cufflinks 0.019     Low Low
cufflinks 0.332        
cufflinks 0.464       High
cufflinks 0.134        
cufflinks 0.239        
cufflinks 0.173        
cufflinks 0.086        
cufflinks 0.205        
cufflinks 0.069       Low
cufflinks 0.053     Low Low
cufflinks 0.046     Low Low
cufflinks 0.386        
cufflinks 0.083     Low  
cufflinks 0.561       High
cufflinks 0.134     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.135        
cufflinks 0.227        
cufflinks 0.096        
cufflinks 0.132        
cufflinks 0.385        
cufflinks 0.269        
cufflinks 0.054     Low Low
cufflinks 0.227        
cufflinks 0.259        
cufflinks 0.293        

0 Strain