Gene : Bradi2g38650 B. distachyon v3.1
Defline:  (1 of 1) PTHR14732:SF0 - RNA POLYMERASE II SUBUNIT B1 CTD PHOSPHATASE RPAP2-RELATED Genomic Order:  4618
Name:  ? Bradi2g38650 Secondary Identifier:  ? PAC:32781180
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g38650 0.5kb upstream 0.5kb upstream 5724 true Bd2: 38692746-38698469 Brachypodium distachyon
Bradi2g38650 0.5kb upstream 0.5kb upstream 500 false Bd2: 38697970-38698469 Brachypodium distachyon
Bradi2g38650 0.5kb downstream 0.5kb downstream 5724 true Bd2: 38692246-38697969 Brachypodium distachyon
Bradi2g38650 0.5kb downstream 0.5kb downstream 500 false Bd2: 38692246-38692745 Brachypodium distachyon
Bradi2g38650 1.0kb upstream 1.0kb upstream 6224 true Bd2: 38692746-38698969 Brachypodium distachyon
Bradi2g38650 1.0kb upstream 1.0kb upstream 1000 false Bd2: 38697970-38698969 Brachypodium distachyon
Bradi2g38650 1.0kb downstream 1.0kb downstream 6224 true Bd2: 38691746-38697969 Brachypodium distachyon
Bradi2g38650 1.0kb downstream 1.0kb downstream 1000 false Bd2: 38691746-38692745 Brachypodium distachyon
Bradi2g38650 2.0kb upstream 2.0kb upstream 7224 true Bd2: 38692746-38699969 Brachypodium distachyon
Bradi2g38650 2.0kb upstream 2.0kb upstream 2000 false Bd2: 38697970-38699969 Brachypodium distachyon
Bradi2g38650 2.0kb downstream 2.0kb downstream 7224 true Bd2: 38690746-38697969 Brachypodium distachyon
Bradi2g38650 2.0kb downstream 2.0kb downstream 2000 false Bd2: 38690746-38692745 Brachypodium distachyon
Bradi2g38650 5.0kb upstream 5.0kb upstream 10224 true Bd2: 38692746-38702969 Brachypodium distachyon
Bradi2g38650 5.0kb upstream 5.0kb upstream 5000 false Bd2: 38697970-38702969 Brachypodium distachyon
Bradi2g38650 5.0kb downstream 5.0kb downstream 10224 true Bd2: 38687746-38697969 Brachypodium distachyon
Bradi2g38650 5.0kb downstream 5.0kb downstream 5000 false Bd2: 38687746-38692745 Brachypodium distachyon
Bradi2g38650 10.0kb upstream 10.0kb upstream 15224 true Bd2: 38692746-38707969 Brachypodium distachyon
Bradi2g38650 10.0kb upstream 10.0kb upstream 10000 false Bd2: 38697970-38707969 Brachypodium distachyon
Bradi2g38650 10.0kb downstream 10.0kb downstream 15224 true Bd2: 38682746-38697969 Brachypodium distachyon
Bradi2g38650 10.0kb downstream 10.0kb downstream 10000 false Bd2: 38682746-38692745 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572985 5269 Grass View MSA
122046248 5273 Angiosperm View MSA
121347996 5274 Embryophyte View MSA
123426503 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.367       Low
cufflinks 2.971        
cufflinks 3.772       High
cufflinks 2.226        
cufflinks 1.318       Low
cufflinks 2.57        
cufflinks 2.685        
cufflinks 2.418        
cufflinks 2.543        
cufflinks 2.359        
cufflinks 3.344        
cufflinks 2.514        
cufflinks 2.438        
cufflinks 2.356        
cufflinks 1.449       Low
cufflinks 2.708        
cufflinks 1.567       Low
cufflinks 4.652       High
cufflinks 2.817        
cufflinks 1.566       Low
cufflinks 2.7        
cufflinks 3.98       High
cufflinks 2.575        
cufflinks 2.332        
cufflinks 2.156        
cufflinks 3.664        
cufflinks 3.35        
cufflinks 3.637        
cufflinks 3.536        
cufflinks 3.027        

0 Strain