Gene : Bradi2g49550 B. distachyon v3.1
Defline:  (1 of 1) PTHR14255//PTHR14255:SF8 - ATP-DEPENDENT PROTEASE CEREBLON // SUBFAMILY NOT NAMED Genomic Order:  5949
Name:  ? Bradi2g49550 Secondary Identifier:  ? PAC:32778523
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g49550 0.5kb upstream 0.5kb upstream 7384 true Bd2: 49389324-49396707 Brachypodium distachyon
Bradi2g49550 0.5kb upstream 0.5kb upstream 500 false Bd2: 49396208-49396707 Brachypodium distachyon
Bradi2g49550 0.5kb downstream 0.5kb downstream 7384 true Bd2: 49388824-49396207 Brachypodium distachyon
Bradi2g49550 0.5kb downstream 0.5kb downstream 500 false Bd2: 49388824-49389323 Brachypodium distachyon
Bradi2g49550 1.0kb upstream 1.0kb upstream 7884 true Bd2: 49389324-49397207 Brachypodium distachyon
Bradi2g49550 1.0kb upstream 1.0kb upstream 1000 false Bd2: 49396208-49397207 Brachypodium distachyon
Bradi2g49550 1.0kb downstream 1.0kb downstream 7884 true Bd2: 49388324-49396207 Brachypodium distachyon
Bradi2g49550 1.0kb downstream 1.0kb downstream 1000 false Bd2: 49388324-49389323 Brachypodium distachyon
Bradi2g49550 2.0kb upstream 2.0kb upstream 8884 true Bd2: 49389324-49398207 Brachypodium distachyon
Bradi2g49550 2.0kb upstream 2.0kb upstream 2000 false Bd2: 49396208-49398207 Brachypodium distachyon
Bradi2g49550 2.0kb downstream 2.0kb downstream 8884 true Bd2: 49387324-49396207 Brachypodium distachyon
Bradi2g49550 2.0kb downstream 2.0kb downstream 2000 false Bd2: 49387324-49389323 Brachypodium distachyon
Bradi2g49550 5.0kb upstream 5.0kb upstream 11884 true Bd2: 49389324-49401207 Brachypodium distachyon
Bradi2g49550 5.0kb upstream 5.0kb upstream 5000 false Bd2: 49396208-49401207 Brachypodium distachyon
Bradi2g49550 5.0kb downstream 5.0kb downstream 11884 true Bd2: 49384324-49396207 Brachypodium distachyon
Bradi2g49550 5.0kb downstream 5.0kb downstream 5000 false Bd2: 49384324-49389323 Brachypodium distachyon
Bradi2g49550 10.0kb upstream 10.0kb upstream 16884 true Bd2: 49389324-49406207 Brachypodium distachyon
Bradi2g49550 10.0kb upstream 10.0kb upstream 10000 false Bd2: 49396208-49406207 Brachypodium distachyon
Bradi2g49550 10.0kb downstream 10.0kb downstream 16884 true Bd2: 49379324-49396207 Brachypodium distachyon
Bradi2g49550 10.0kb downstream 10.0kb downstream 10000 false Bd2: 49379324-49389323 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124587151 5269 Grass View MSA
122043636 5273 Angiosperm View MSA
121351486 5274 Embryophyte View MSA
123427639 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.304        
cufflinks 0.357        
cufflinks 0.452       High
cufflinks 0.317        
cufflinks 0.256        
cufflinks 0.284        
cufflinks 0.3        
cufflinks 0.303        
cufflinks 0.34        
cufflinks 0.416        
cufflinks 0.303        
cufflinks 0.25        
cufflinks 0.215       Low
cufflinks 0.256        
cufflinks 0.234        
cufflinks 0.293        
cufflinks 0.256        
cufflinks 0.542       High
cufflinks 0.483       High
cufflinks 0.153       Low
cufflinks 0.354        
cufflinks 0.476       High
cufflinks 0.296        
cufflinks 0.3        
cufflinks 0.319        
cufflinks 0.474       High
cufflinks 0.336        
cufflinks 0.527       High
cufflinks 0.41        
cufflinks 0.365        

0 Strain