Gene : Bradi4g16010 B. distachyon v3.1
Defline:  (1 of 3) 5.2.1.13 - Prolycopene isomerase / CRTISO Genomic Order:  2124
Name:  ? Bradi4g16010 Secondary Identifier:  ? PAC:32789725
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CAROTENOID-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-6475 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g16010 0.5kb upstream 0.5kb upstream 5417 true Bd4: 16622585-16628001 Brachypodium distachyon
Bradi4g16010 0.5kb upstream 0.5kb upstream 500 false Bd4: 16622585-16623084 Brachypodium distachyon
Bradi4g16010 0.5kb downstream 0.5kb downstream 5417 true Bd4: 16623085-16628501 Brachypodium distachyon
Bradi4g16010 0.5kb downstream 0.5kb downstream 500 false Bd4: 16628002-16628501 Brachypodium distachyon
Bradi4g16010 1.0kb upstream 1.0kb upstream 5917 true Bd4: 16622085-16628001 Brachypodium distachyon
Bradi4g16010 1.0kb upstream 1.0kb upstream 1000 false Bd4: 16622085-16623084 Brachypodium distachyon
Bradi4g16010 1.0kb downstream 1.0kb downstream 5917 true Bd4: 16623085-16629001 Brachypodium distachyon
Bradi4g16010 1.0kb downstream 1.0kb downstream 1000 false Bd4: 16628002-16629001 Brachypodium distachyon
Bradi4g16010 2.0kb upstream 2.0kb upstream 6917 true Bd4: 16621085-16628001 Brachypodium distachyon
Bradi4g16010 2.0kb upstream 2.0kb upstream 2000 false Bd4: 16621085-16623084 Brachypodium distachyon
Bradi4g16010 2.0kb downstream 2.0kb downstream 6917 true Bd4: 16623085-16630001 Brachypodium distachyon
Bradi4g16010 2.0kb downstream 2.0kb downstream 2000 false Bd4: 16628002-16630001 Brachypodium distachyon
Bradi4g16010 5.0kb upstream 5.0kb upstream 9917 true Bd4: 16618085-16628001 Brachypodium distachyon
Bradi4g16010 5.0kb upstream 5.0kb upstream 5000 false Bd4: 16618085-16623084 Brachypodium distachyon
Bradi4g16010 5.0kb downstream 5.0kb downstream 9917 true Bd4: 16623085-16633001 Brachypodium distachyon
Bradi4g16010 5.0kb downstream 5.0kb downstream 5000 false Bd4: 16628002-16633001 Brachypodium distachyon
Bradi4g16010 10.0kb upstream 10.0kb upstream 14917 true Bd4: 16613085-16628001 Brachypodium distachyon
Bradi4g16010 10.0kb upstream 10.0kb upstream 10000 false Bd4: 16613085-16623084 Brachypodium distachyon
Bradi4g16010 10.0kb downstream 10.0kb downstream 14917 true Bd4: 16623085-16638001 Brachypodium distachyon
Bradi4g16010 10.0kb downstream 10.0kb downstream 10000 false Bd4: 16628002-16638001 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026345 5273 Angiosperm View MSA
124578068 5269 Grass View MSA
121345795 5274 Embryophyte View MSA
123425130 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.806     High  
cufflinks 9.923        
cufflinks 13.119     High High
cufflinks 11.493     High High
cufflinks 4.293        
cufflinks 6.163        
cufflinks 6.402        
cufflinks 7.078        
cufflinks 6.53        
cufflinks 9.667        
cufflinks 8.058        
cufflinks 7.17        
cufflinks 7.412     High  
cufflinks 8.059     High  
cufflinks 8.623     High  
cufflinks 7.7        
cufflinks 5.56        
cufflinks 1.657       Low
cufflinks 3.22       Low
cufflinks 3.15       Low
cufflinks 2.706       Low
cufflinks 12.488     High High
cufflinks 7.392        
cufflinks 6.595        
cufflinks 6.225        
cufflinks 13.528     High High
cufflinks 11.549     High High
cufflinks 13.353     High High
cufflinks 12.906     High High
cufflinks 4.372        

0 Strain