Gene : Bradi2g46527 B. distachyon v3.1
Defline:  (1 of 1) PTHR12548:SF14 - TRANSCRIPTION FACTOR-LIKE PROTEIN DPA Genomic Order:  5578
Name:  ? Bradi2g46527 Secondary Identifier:  ? PAC:32775417
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g46527 0.5kb upstream 0.5kb upstream 3955 true Bd2: 46740476-46744430 Brachypodium distachyon
Bradi2g46527 0.5kb upstream 0.5kb upstream 500 false Bd2: 46743931-46744430 Brachypodium distachyon
Bradi2g46527 0.5kb downstream 0.5kb downstream 3955 true Bd2: 46739976-46743930 Brachypodium distachyon
Bradi2g46527 0.5kb downstream 0.5kb downstream 500 false Bd2: 46739976-46740475 Brachypodium distachyon
Bradi2g46527 1.0kb upstream 1.0kb upstream 4455 true Bd2: 46740476-46744930 Brachypodium distachyon
Bradi2g46527 1.0kb upstream 1.0kb upstream 1000 false Bd2: 46743931-46744930 Brachypodium distachyon
Bradi2g46527 1.0kb downstream 1.0kb downstream 4455 true Bd2: 46739476-46743930 Brachypodium distachyon
Bradi2g46527 1.0kb downstream 1.0kb downstream 1000 false Bd2: 46739476-46740475 Brachypodium distachyon
Bradi2g46527 2.0kb upstream 2.0kb upstream 5455 true Bd2: 46740476-46745930 Brachypodium distachyon
Bradi2g46527 2.0kb upstream 2.0kb upstream 2000 false Bd2: 46743931-46745930 Brachypodium distachyon
Bradi2g46527 2.0kb downstream 2.0kb downstream 5455 true Bd2: 46738476-46743930 Brachypodium distachyon
Bradi2g46527 2.0kb downstream 2.0kb downstream 2000 false Bd2: 46738476-46740475 Brachypodium distachyon
Bradi2g46527 5.0kb upstream 5.0kb upstream 8455 true Bd2: 46740476-46748930 Brachypodium distachyon
Bradi2g46527 5.0kb upstream 5.0kb upstream 5000 false Bd2: 46743931-46748930 Brachypodium distachyon
Bradi2g46527 5.0kb downstream 5.0kb downstream 8455 true Bd2: 46735476-46743930 Brachypodium distachyon
Bradi2g46527 5.0kb downstream 5.0kb downstream 5000 false Bd2: 46735476-46740475 Brachypodium distachyon
Bradi2g46527 10.0kb upstream 10.0kb upstream 13455 true Bd2: 46740476-46753930 Brachypodium distachyon
Bradi2g46527 10.0kb upstream 10.0kb upstream 10000 false Bd2: 46743931-46753930 Brachypodium distachyon
Bradi2g46527 10.0kb downstream 10.0kb downstream 13455 true Bd2: 46730476-46743930 Brachypodium distachyon
Bradi2g46527 10.0kb downstream 10.0kb downstream 10000 false Bd2: 46730476-46740475 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577421 5269 Grass View MSA
122050879 5273 Angiosperm View MSA
121349411 5274 Embryophyte View MSA
123427533 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.12        
cufflinks 0.164        
cufflinks 0.099        
cufflinks 0.178        
cufflinks 0.084     Low  
cufflinks 0.139        
cufflinks 0.127        
cufflinks 0.106        
cufflinks 0.182        
cufflinks 0.155        
cufflinks 0.03     Low Low
cufflinks 0.117        
cufflinks 0.05     Low Low
cufflinks 0.04     Low Low
cufflinks 0.113        
cufflinks 0.093        
cufflinks 0.386       High
cufflinks 0.297       High
cufflinks 0.145     Low  
cufflinks 0.01     Low Low
cufflinks 0.201        
cufflinks 0.124     Low  
cufflinks 0.101        
cufflinks 0.1     Low  
cufflinks 0.145        
cufflinks 0.263       High
cufflinks 0.054     Low Low
cufflinks 0.21        
cufflinks 0.223        
cufflinks 0.218        

0 Strain