Gene : Bradi2g47540 B. distachyon v3.1
Defline:  (1 of 1) PTHR10791//PTHR10791:SF54 - RAG1-ACTIVATING PROTEIN 1 Genomic Order:  5713
Name:  ? Bradi2g47540 Secondary Identifier:  ? PAC:32772472
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g47540 0.5kb upstream 0.5kb upstream 6790 true Bd2: 47710572-47717361 Brachypodium distachyon
Bradi2g47540 0.5kb upstream 0.5kb upstream 500 false Bd2: 47710572-47711071 Brachypodium distachyon
Bradi2g47540 0.5kb downstream 0.5kb downstream 6790 true Bd2: 47711072-47717861 Brachypodium distachyon
Bradi2g47540 0.5kb downstream 0.5kb downstream 500 false Bd2: 47717362-47717861 Brachypodium distachyon
Bradi2g47540 1.0kb upstream 1.0kb upstream 7290 true Bd2: 47710072-47717361 Brachypodium distachyon
Bradi2g47540 1.0kb upstream 1.0kb upstream 1000 false Bd2: 47710072-47711071 Brachypodium distachyon
Bradi2g47540 1.0kb downstream 1.0kb downstream 7290 true Bd2: 47711072-47718361 Brachypodium distachyon
Bradi2g47540 1.0kb downstream 1.0kb downstream 1000 false Bd2: 47717362-47718361 Brachypodium distachyon
Bradi2g47540 2.0kb upstream 2.0kb upstream 8290 true Bd2: 47709072-47717361 Brachypodium distachyon
Bradi2g47540 2.0kb upstream 2.0kb upstream 2000 false Bd2: 47709072-47711071 Brachypodium distachyon
Bradi2g47540 2.0kb downstream 2.0kb downstream 8290 true Bd2: 47711072-47719361 Brachypodium distachyon
Bradi2g47540 2.0kb downstream 2.0kb downstream 2000 false Bd2: 47717362-47719361 Brachypodium distachyon
Bradi2g47540 5.0kb upstream 5.0kb upstream 11290 true Bd2: 47706072-47717361 Brachypodium distachyon
Bradi2g47540 5.0kb upstream 5.0kb upstream 5000 false Bd2: 47706072-47711071 Brachypodium distachyon
Bradi2g47540 5.0kb downstream 5.0kb downstream 11290 true Bd2: 47711072-47722361 Brachypodium distachyon
Bradi2g47540 5.0kb downstream 5.0kb downstream 5000 false Bd2: 47717362-47722361 Brachypodium distachyon
Bradi2g47540 10.0kb upstream 10.0kb upstream 16290 true Bd2: 47701072-47717361 Brachypodium distachyon
Bradi2g47540 10.0kb upstream 10.0kb upstream 10000 false Bd2: 47701072-47711071 Brachypodium distachyon
Bradi2g47540 10.0kb downstream 10.0kb downstream 16290 true Bd2: 47711072-47727361 Brachypodium distachyon
Bradi2g47540 10.0kb downstream 10.0kb downstream 10000 false Bd2: 47717362-47727361 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571013 5269 Grass View MSA
122048091 5273 Angiosperm View MSA
121310847 5274 Embryophyte View MSA
123348232 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 115.559     High High
cufflinks 2.935        
cufflinks 1.26       Low
cufflinks 4.594        
cufflinks 3.899        
cufflinks 11.871     High  
cufflinks 4.716        
cufflinks 19.806     High  
cufflinks 19.559     High  
cufflinks 24.385     High  
cufflinks 10.485     High  
cufflinks 17.907     High  
cufflinks 27.67     High  
cufflinks 22.61     High  
cufflinks 157.579     High High
cufflinks 11.19     High  
cufflinks 18.26     High  
cufflinks 0.068     Low Low
cufflinks 1.137       Low
cufflinks 1.988        
cufflinks 3.904        
cufflinks 22.287     High  
cufflinks 21.09     High  
cufflinks 24.283     High  
cufflinks 16.312     High  
cufflinks 2.676        
cufflinks 35.354     High  
cufflinks 9.09        
cufflinks 21.725     High  
cufflinks 2.139        

0 Strain