Gene : Bradi2g51830 B. distachyon v3.1
Defline:  (1 of 5) K17871 - NADH:ubiquinone reductase (non-electrogenic) (ndh1) Genomic Order:  6230
Name:  ? Bradi2g51830 Secondary Identifier:  ? PAC:32774323
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7279 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g51830 0.5kb upstream 0.5kb upstream 5717 true Bd2: 51186231-51191947 Brachypodium distachyon
Bradi2g51830 0.5kb upstream 0.5kb upstream 500 false Bd2: 51186231-51186730 Brachypodium distachyon
Bradi2g51830 0.5kb downstream 0.5kb downstream 5717 true Bd2: 51186731-51192447 Brachypodium distachyon
Bradi2g51830 0.5kb downstream 0.5kb downstream 500 false Bd2: 51191948-51192447 Brachypodium distachyon
Bradi2g51830 1.0kb upstream 1.0kb upstream 6217 true Bd2: 51185731-51191947 Brachypodium distachyon
Bradi2g51830 1.0kb upstream 1.0kb upstream 1000 false Bd2: 51185731-51186730 Brachypodium distachyon
Bradi2g51830 1.0kb downstream 1.0kb downstream 6217 true Bd2: 51186731-51192947 Brachypodium distachyon
Bradi2g51830 1.0kb downstream 1.0kb downstream 1000 false Bd2: 51191948-51192947 Brachypodium distachyon
Bradi2g51830 2.0kb upstream 2.0kb upstream 7217 true Bd2: 51184731-51191947 Brachypodium distachyon
Bradi2g51830 2.0kb upstream 2.0kb upstream 2000 false Bd2: 51184731-51186730 Brachypodium distachyon
Bradi2g51830 2.0kb downstream 2.0kb downstream 7217 true Bd2: 51186731-51193947 Brachypodium distachyon
Bradi2g51830 2.0kb downstream 2.0kb downstream 2000 false Bd2: 51191948-51193947 Brachypodium distachyon
Bradi2g51830 5.0kb upstream 5.0kb upstream 10217 true Bd2: 51181731-51191947 Brachypodium distachyon
Bradi2g51830 5.0kb upstream 5.0kb upstream 5000 false Bd2: 51181731-51186730 Brachypodium distachyon
Bradi2g51830 5.0kb downstream 5.0kb downstream 10217 true Bd2: 51186731-51196947 Brachypodium distachyon
Bradi2g51830 5.0kb downstream 5.0kb downstream 5000 false Bd2: 51191948-51196947 Brachypodium distachyon
Bradi2g51830 10.0kb upstream 10.0kb upstream 15217 true Bd2: 51176731-51191947 Brachypodium distachyon
Bradi2g51830 10.0kb upstream 10.0kb upstream 10000 false Bd2: 51176731-51186730 Brachypodium distachyon
Bradi2g51830 10.0kb downstream 10.0kb downstream 15217 true Bd2: 51186731-51201947 Brachypodium distachyon
Bradi2g51830 10.0kb downstream 10.0kb downstream 10000 false Bd2: 51191948-51201947 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586360 5269 Grass View MSA
122046891 5273 Angiosperm View MSA
121348097 5274 Embryophyte View MSA
123427504 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.152       High
cufflinks 0.109        
cufflinks 0.04     Low  
cufflinks 0.089     Low  
cufflinks 0.02     Low  
cufflinks 0.06     Low  
cufflinks 0.082     Low  
cufflinks 0.029     Low  
cufflinks 0.027     Low  
cufflinks 0.017     Low  
cufflinks 0.006     Low Low
cufflinks 0.049     Low  
cufflinks 0.009     Low Low
cufflinks 0.006     Low Low
cufflinks 0.047     Low  
cufflinks 0.114        
cufflinks 0.072     Low  
cufflinks 0.133     Low High
cufflinks 0.079     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.051     Low  
cufflinks 0.028     Low  
cufflinks 0.027     Low  
cufflinks 0.026     Low  
cufflinks 0.069     Low  
cufflinks 0.035     Low  
cufflinks 0.016     Low  
cufflinks 0.017     Low  
cufflinks 0.013     Low Low
cufflinks 0.099     Low  

0 Strain