Gene : Bradi2g51800 B. distachyon v3.1
Defline:  (1 of 1) PTHR12937 - VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28 Genomic Order:  6227
Name:  ? Bradi2g51800 Secondary Identifier:  ? PAC:32773833
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g51800 0.5kb upstream 0.5kb upstream 5684 true Bd2: 51169061-51174744 Brachypodium distachyon
Bradi2g51800 0.5kb upstream 0.5kb upstream 500 false Bd2: 51169061-51169560 Brachypodium distachyon
Bradi2g51800 0.5kb downstream 0.5kb downstream 5684 true Bd2: 51169561-51175244 Brachypodium distachyon
Bradi2g51800 0.5kb downstream 0.5kb downstream 500 false Bd2: 51174745-51175244 Brachypodium distachyon
Bradi2g51800 1.0kb upstream 1.0kb upstream 6184 true Bd2: 51168561-51174744 Brachypodium distachyon
Bradi2g51800 1.0kb upstream 1.0kb upstream 1000 false Bd2: 51168561-51169560 Brachypodium distachyon
Bradi2g51800 1.0kb downstream 1.0kb downstream 6184 true Bd2: 51169561-51175744 Brachypodium distachyon
Bradi2g51800 1.0kb downstream 1.0kb downstream 1000 false Bd2: 51174745-51175744 Brachypodium distachyon
Bradi2g51800 2.0kb upstream 2.0kb upstream 7184 true Bd2: 51167561-51174744 Brachypodium distachyon
Bradi2g51800 2.0kb upstream 2.0kb upstream 2000 false Bd2: 51167561-51169560 Brachypodium distachyon
Bradi2g51800 2.0kb downstream 2.0kb downstream 7184 true Bd2: 51169561-51176744 Brachypodium distachyon
Bradi2g51800 2.0kb downstream 2.0kb downstream 2000 false Bd2: 51174745-51176744 Brachypodium distachyon
Bradi2g51800 5.0kb upstream 5.0kb upstream 10184 true Bd2: 51164561-51174744 Brachypodium distachyon
Bradi2g51800 5.0kb upstream 5.0kb upstream 5000 false Bd2: 51164561-51169560 Brachypodium distachyon
Bradi2g51800 5.0kb downstream 5.0kb downstream 10184 true Bd2: 51169561-51179744 Brachypodium distachyon
Bradi2g51800 5.0kb downstream 5.0kb downstream 5000 false Bd2: 51174745-51179744 Brachypodium distachyon
Bradi2g51800 10.0kb upstream 10.0kb upstream 15184 true Bd2: 51159561-51174744 Brachypodium distachyon
Bradi2g51800 10.0kb upstream 10.0kb upstream 10000 false Bd2: 51159561-51169560 Brachypodium distachyon
Bradi2g51800 10.0kb downstream 10.0kb downstream 15184 true Bd2: 51169561-51184744 Brachypodium distachyon
Bradi2g51800 10.0kb downstream 10.0kb downstream 10000 false Bd2: 51174745-51184744 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572252 5269 Grass View MSA
122044389 5273 Angiosperm View MSA
121350792 5274 Embryophyte View MSA
123425897 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.295       Low
cufflinks 0.549        
cufflinks 0.631        
cufflinks 0.491        
cufflinks 0.437        
cufflinks 0.535        
cufflinks 0.637        
cufflinks 0.481        
cufflinks 0.53        
cufflinks 0.456        
cufflinks 0.803       High
cufflinks 0.581        
cufflinks 0.584        
cufflinks 0.627        
cufflinks 0.372       Low
cufflinks 0.546        
cufflinks 0.403       Low
cufflinks 0.618        
cufflinks 0.638        
cufflinks 0.641        
cufflinks 0.852       High
cufflinks 0.547        
cufflinks 0.504        
cufflinks 0.497        
cufflinks 0.511        
cufflinks 0.562        
cufflinks 0.657        
cufflinks 0.698        
cufflinks 0.629        
cufflinks 0.657        

0 Strain