Gene : Bradi4g18359 B. distachyon v3.1
Defline:  (1 of 25) PTHR23273 - REPLICATION FACTOR A 1, RFA1 Genomic Order:  2428
Name:  ? Bradi4g18359 Secondary Identifier:  ? PAC:32785878
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g18359 0.5kb upstream 0.5kb upstream 3791 true Bd4: 20559052-20562842 Brachypodium distachyon
Bradi4g18359 0.5kb upstream 0.5kb upstream 500 false Bd4: 20559052-20559551 Brachypodium distachyon
Bradi4g18359 0.5kb downstream 0.5kb downstream 3791 true Bd4: 20559552-20563342 Brachypodium distachyon
Bradi4g18359 0.5kb downstream 0.5kb downstream 500 false Bd4: 20562843-20563342 Brachypodium distachyon
Bradi4g18359 1.0kb upstream 1.0kb upstream 4291 true Bd4: 20558552-20562842 Brachypodium distachyon
Bradi4g18359 1.0kb upstream 1.0kb upstream 1000 false Bd4: 20558552-20559551 Brachypodium distachyon
Bradi4g18359 1.0kb downstream 1.0kb downstream 4291 true Bd4: 20559552-20563842 Brachypodium distachyon
Bradi4g18359 1.0kb downstream 1.0kb downstream 1000 false Bd4: 20562843-20563842 Brachypodium distachyon
Bradi4g18359 2.0kb upstream 2.0kb upstream 5291 true Bd4: 20557552-20562842 Brachypodium distachyon
Bradi4g18359 2.0kb upstream 2.0kb upstream 2000 false Bd4: 20557552-20559551 Brachypodium distachyon
Bradi4g18359 2.0kb downstream 2.0kb downstream 5291 true Bd4: 20559552-20564842 Brachypodium distachyon
Bradi4g18359 2.0kb downstream 2.0kb downstream 2000 false Bd4: 20562843-20564842 Brachypodium distachyon
Bradi4g18359 5.0kb upstream 5.0kb upstream 8291 true Bd4: 20554552-20562842 Brachypodium distachyon
Bradi4g18359 5.0kb upstream 5.0kb upstream 5000 false Bd4: 20554552-20559551 Brachypodium distachyon
Bradi4g18359 5.0kb downstream 5.0kb downstream 8291 true Bd4: 20559552-20567842 Brachypodium distachyon
Bradi4g18359 5.0kb downstream 5.0kb downstream 5000 false Bd4: 20562843-20567842 Brachypodium distachyon
Bradi4g18359 10.0kb upstream 10.0kb upstream 13291 true Bd4: 20549552-20562842 Brachypodium distachyon
Bradi4g18359 10.0kb upstream 10.0kb upstream 10000 false Bd4: 20549552-20559551 Brachypodium distachyon
Bradi4g18359 10.0kb downstream 10.0kb downstream 13291 true Bd4: 20559552-20572842 Brachypodium distachyon
Bradi4g18359 10.0kb downstream 10.0kb downstream 10000 false Bd4: 20562843-20572842 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029830 5273 Angiosperm View MSA
124590273 5269 Grass View MSA
121351580 5274 Embryophyte View MSA
123426292 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.73        
cufflinks 3.252        
cufflinks 4.972       High
cufflinks 1.734        
cufflinks 0.462       Low
cufflinks 3.137        
cufflinks 2.589        
cufflinks 2.263        
cufflinks 2.8        
cufflinks 2.163        
cufflinks 2.647        
cufflinks 2.736        
cufflinks 2.386        
cufflinks 1.804        
cufflinks 0.954        
cufflinks 3.585        
cufflinks 0.524        
cufflinks 3.825        
cufflinks 0.445       Low
cufflinks 0.215       Low
cufflinks 1.157        
cufflinks 5.63       High
cufflinks 2.294        
cufflinks 2.168        
cufflinks 1.878        
cufflinks 4.445        
cufflinks 2.606        
cufflinks 4.92       High
cufflinks 4.487        
cufflinks 2.467        

0 Strain