Gene : Bradi2g57260 B. distachyon v3.1
Defline:  (1 of 1) 2.7.7.60 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / MEP cytidylyltransferase Genomic Order:  6894
Name:  ? Bradi2g57260 Secondary Identifier:  ? PAC:32779090
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7560 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g57260 0.5kb upstream 0.5kb upstream 4364 true Bd2: 55237522-55241885 Brachypodium distachyon
Bradi2g57260 0.5kb upstream 0.5kb upstream 500 false Bd2: 55237522-55238021 Brachypodium distachyon
Bradi2g57260 0.5kb downstream 0.5kb downstream 4364 true Bd2: 55238022-55242385 Brachypodium distachyon
Bradi2g57260 0.5kb downstream 0.5kb downstream 500 false Bd2: 55241886-55242385 Brachypodium distachyon
Bradi2g57260 1.0kb upstream 1.0kb upstream 4864 true Bd2: 55237022-55241885 Brachypodium distachyon
Bradi2g57260 1.0kb upstream 1.0kb upstream 1000 false Bd2: 55237022-55238021 Brachypodium distachyon
Bradi2g57260 1.0kb downstream 1.0kb downstream 4864 true Bd2: 55238022-55242885 Brachypodium distachyon
Bradi2g57260 1.0kb downstream 1.0kb downstream 1000 false Bd2: 55241886-55242885 Brachypodium distachyon
Bradi2g57260 2.0kb upstream 2.0kb upstream 5864 true Bd2: 55236022-55241885 Brachypodium distachyon
Bradi2g57260 2.0kb upstream 2.0kb upstream 2000 false Bd2: 55236022-55238021 Brachypodium distachyon
Bradi2g57260 2.0kb downstream 2.0kb downstream 5864 true Bd2: 55238022-55243885 Brachypodium distachyon
Bradi2g57260 2.0kb downstream 2.0kb downstream 2000 false Bd2: 55241886-55243885 Brachypodium distachyon
Bradi2g57260 5.0kb upstream 5.0kb upstream 8864 true Bd2: 55233022-55241885 Brachypodium distachyon
Bradi2g57260 5.0kb upstream 5.0kb upstream 5000 false Bd2: 55233022-55238021 Brachypodium distachyon
Bradi2g57260 5.0kb downstream 5.0kb downstream 8864 true Bd2: 55238022-55246885 Brachypodium distachyon
Bradi2g57260 5.0kb downstream 5.0kb downstream 5000 false Bd2: 55241886-55246885 Brachypodium distachyon
Bradi2g57260 10.0kb upstream 10.0kb upstream 13864 true Bd2: 55228022-55241885 Brachypodium distachyon
Bradi2g57260 10.0kb upstream 10.0kb upstream 10000 false Bd2: 55228022-55238021 Brachypodium distachyon
Bradi2g57260 10.0kb downstream 10.0kb downstream 13864 true Bd2: 55238022-55251885 Brachypodium distachyon
Bradi2g57260 10.0kb downstream 10.0kb downstream 10000 false Bd2: 55241886-55251885 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578057 5269 Grass View MSA
122044265 5273 Angiosperm View MSA
121344499 5274 Embryophyte View MSA
123424809 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.725     High  
cufflinks 12.191     High  
cufflinks 12.868     High  
cufflinks 16.958     High  
cufflinks 19.47     High High
cufflinks 11.164     High  
cufflinks 10.787     High  
cufflinks 13.367     High  
cufflinks 13.414     High  
cufflinks 16.709     High  
cufflinks 12.514     High  
cufflinks 10.484     High  
cufflinks 12.011     High  
cufflinks 15.864     High  
cufflinks 14.912     High  
cufflinks 10.648     High  
cufflinks 13.068     High  
cufflinks 2.094       Low
cufflinks 6.164       Low
cufflinks 6.965        
cufflinks 4.699       Low
cufflinks 12.662     High  
cufflinks 14.528     High  
cufflinks 15.943     High  
cufflinks 14.039     High  
cufflinks 16.986     High  
cufflinks 11.15     High  
cufflinks 14.615     High  
cufflinks 13.44     High  
cufflinks 6.82        

0 Strain