Gene : Bradi2g57420 B. distachyon v3.1
Defline:  (1 of 5) K12373 - hexosaminidase (HEXA_B) Genomic Order:  6919
Name:  ? Bradi2g57420 Secondary Identifier:  ? PAC:32771340
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6902 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g57420 0.5kb upstream 0.5kb upstream 6560 true Bd2: 55388240-55394799 Brachypodium distachyon
Bradi2g57420 0.5kb upstream 0.5kb upstream 500 false Bd2: 55394300-55394799 Brachypodium distachyon
Bradi2g57420 0.5kb downstream 0.5kb downstream 6560 true Bd2: 55387740-55394299 Brachypodium distachyon
Bradi2g57420 0.5kb downstream 0.5kb downstream 500 false Bd2: 55387740-55388239 Brachypodium distachyon
Bradi2g57420 1.0kb upstream 1.0kb upstream 7060 true Bd2: 55388240-55395299 Brachypodium distachyon
Bradi2g57420 1.0kb upstream 1.0kb upstream 1000 false Bd2: 55394300-55395299 Brachypodium distachyon
Bradi2g57420 1.0kb downstream 1.0kb downstream 7060 true Bd2: 55387240-55394299 Brachypodium distachyon
Bradi2g57420 1.0kb downstream 1.0kb downstream 1000 false Bd2: 55387240-55388239 Brachypodium distachyon
Bradi2g57420 2.0kb upstream 2.0kb upstream 8060 true Bd2: 55388240-55396299 Brachypodium distachyon
Bradi2g57420 2.0kb upstream 2.0kb upstream 2000 false Bd2: 55394300-55396299 Brachypodium distachyon
Bradi2g57420 2.0kb downstream 2.0kb downstream 8060 true Bd2: 55386240-55394299 Brachypodium distachyon
Bradi2g57420 2.0kb downstream 2.0kb downstream 2000 false Bd2: 55386240-55388239 Brachypodium distachyon
Bradi2g57420 5.0kb upstream 5.0kb upstream 11060 true Bd2: 55388240-55399299 Brachypodium distachyon
Bradi2g57420 5.0kb upstream 5.0kb upstream 5000 false Bd2: 55394300-55399299 Brachypodium distachyon
Bradi2g57420 5.0kb downstream 5.0kb downstream 11060 true Bd2: 55383240-55394299 Brachypodium distachyon
Bradi2g57420 5.0kb downstream 5.0kb downstream 5000 false Bd2: 55383240-55388239 Brachypodium distachyon
Bradi2g57420 10.0kb upstream 10.0kb upstream 16060 true Bd2: 55388240-55404299 Brachypodium distachyon
Bradi2g57420 10.0kb upstream 10.0kb upstream 10000 false Bd2: 55394300-55404299 Brachypodium distachyon
Bradi2g57420 10.0kb downstream 10.0kb downstream 16060 true Bd2: 55378240-55394299 Brachypodium distachyon
Bradi2g57420 10.0kb downstream 10.0kb downstream 10000 false Bd2: 55378240-55388239 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571085 5269 Grass View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.045     Low  
cufflinks 0.099        
cufflinks 0.092     Low  
cufflinks 0.067     Low  
cufflinks 0.034     Low  
cufflinks 0.108        
cufflinks 0.096        
cufflinks 0.069     Low  
cufflinks 0.092     Low  
cufflinks 0.042     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.103        
cufflinks 0.002     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.048     Low  
cufflinks 0.094        
cufflinks 0.215        
cufflinks 0.455       High
cufflinks 0.142     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.222        
cufflinks 0.056     Low  
cufflinks 0.084     Low  
cufflinks 0.162        
cufflinks 0.109        
cufflinks 0.065     Low  
cufflinks 0.004     Low Low
cufflinks 0.063     Low  
cufflinks 0.041     Low  
cufflinks 0.263       High

0 Strain