Gene : Bradi2g57777 B. distachyon v3.1
Defline:  (1 of 3) PTHR22761:SF8 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 32 HOMOLOG 1-RELATED Genomic Order:  6970
Name:  ? Bradi2g57777 Secondary Identifier:  ? PAC:32771824
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g57777 0.5kb upstream 0.5kb upstream 4606 true Bd2: 55660996-55665601 Brachypodium distachyon
Bradi2g57777 0.5kb upstream 0.5kb upstream 500 false Bd2: 55665102-55665601 Brachypodium distachyon
Bradi2g57777 0.5kb downstream 0.5kb downstream 4606 true Bd2: 55660496-55665101 Brachypodium distachyon
Bradi2g57777 0.5kb downstream 0.5kb downstream 500 false Bd2: 55660496-55660995 Brachypodium distachyon
Bradi2g57777 1.0kb upstream 1.0kb upstream 5106 true Bd2: 55660996-55666101 Brachypodium distachyon
Bradi2g57777 1.0kb upstream 1.0kb upstream 1000 false Bd2: 55665102-55666101 Brachypodium distachyon
Bradi2g57777 1.0kb downstream 1.0kb downstream 5106 true Bd2: 55659996-55665101 Brachypodium distachyon
Bradi2g57777 1.0kb downstream 1.0kb downstream 1000 false Bd2: 55659996-55660995 Brachypodium distachyon
Bradi2g57777 2.0kb upstream 2.0kb upstream 6106 true Bd2: 55660996-55667101 Brachypodium distachyon
Bradi2g57777 2.0kb upstream 2.0kb upstream 2000 false Bd2: 55665102-55667101 Brachypodium distachyon
Bradi2g57777 2.0kb downstream 2.0kb downstream 6106 true Bd2: 55658996-55665101 Brachypodium distachyon
Bradi2g57777 2.0kb downstream 2.0kb downstream 2000 false Bd2: 55658996-55660995 Brachypodium distachyon
Bradi2g57777 5.0kb upstream 5.0kb upstream 9106 true Bd2: 55660996-55670101 Brachypodium distachyon
Bradi2g57777 5.0kb upstream 5.0kb upstream 5000 false Bd2: 55665102-55670101 Brachypodium distachyon
Bradi2g57777 5.0kb downstream 5.0kb downstream 9106 true Bd2: 55655996-55665101 Brachypodium distachyon
Bradi2g57777 5.0kb downstream 5.0kb downstream 5000 false Bd2: 55655996-55660995 Brachypodium distachyon
Bradi2g57777 10.0kb upstream 10.0kb upstream 14106 true Bd2: 55660996-55675101 Brachypodium distachyon
Bradi2g57777 10.0kb upstream 10.0kb upstream 10000 false Bd2: 55665102-55675101 Brachypodium distachyon
Bradi2g57777 10.0kb downstream 10.0kb downstream 14106 true Bd2: 55650996-55665101 Brachypodium distachyon
Bradi2g57777 10.0kb downstream 10.0kb downstream 10000 false Bd2: 55650996-55660995 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589159 5269 Grass View MSA
122048548 5273 Angiosperm View MSA
121350329 5274 Embryophyte View MSA
123426511 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.713        
cufflinks 6.45        
cufflinks 6.392        
cufflinks 6.178        
cufflinks 9.295     High  
cufflinks 5.714        
cufflinks 6.574        
cufflinks 5.517       Low
cufflinks 4.986       Low
cufflinks 5.699       Low
cufflinks 6.793        
cufflinks 7.255        
cufflinks 6.34        
cufflinks 5.526       Low
cufflinks 8.685     High  
cufflinks 6.219        
cufflinks 10.659       High
cufflinks 10.649       High
cufflinks 14.542     High High
cufflinks 9.961       High
cufflinks 12.32     High High
cufflinks 5.475       Low
cufflinks 5.516       Low
cufflinks 5.765        
cufflinks 5.837        
cufflinks 7.423        
cufflinks 7.181        
cufflinks 6.932        
cufflinks 6.366        
cufflinks 9.802       High

0 Strain