Gene : Bradi4g23380 B. distachyon v3.1
Defline:  (1 of 1) PTHR30612//PTHR30612:SF5 - SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM // PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC Genomic Order:  2964
Name:  ? Bradi4g23380 Secondary Identifier:  ? PAC:32782954
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g23380 0.5kb upstream 0.5kb upstream 13334 true Bd4: 28102005-28115338 Brachypodium distachyon
Bradi4g23380 0.5kb upstream 0.5kb upstream 500 false Bd4: 28114839-28115338 Brachypodium distachyon
Bradi4g23380 0.5kb downstream 0.5kb downstream 13334 true Bd4: 28101505-28114838 Brachypodium distachyon
Bradi4g23380 0.5kb downstream 0.5kb downstream 500 false Bd4: 28101505-28102004 Brachypodium distachyon
Bradi4g23380 1.0kb upstream 1.0kb upstream 13834 true Bd4: 28102005-28115838 Brachypodium distachyon
Bradi4g23380 1.0kb upstream 1.0kb upstream 1000 false Bd4: 28114839-28115838 Brachypodium distachyon
Bradi4g23380 1.0kb downstream 1.0kb downstream 13834 true Bd4: 28101005-28114838 Brachypodium distachyon
Bradi4g23380 1.0kb downstream 1.0kb downstream 1000 false Bd4: 28101005-28102004 Brachypodium distachyon
Bradi4g23380 2.0kb upstream 2.0kb upstream 14834 true Bd4: 28102005-28116838 Brachypodium distachyon
Bradi4g23380 2.0kb upstream 2.0kb upstream 2000 false Bd4: 28114839-28116838 Brachypodium distachyon
Bradi4g23380 2.0kb downstream 2.0kb downstream 14834 true Bd4: 28100005-28114838 Brachypodium distachyon
Bradi4g23380 2.0kb downstream 2.0kb downstream 2000 false Bd4: 28100005-28102004 Brachypodium distachyon
Bradi4g23380 5.0kb upstream 5.0kb upstream 17834 true Bd4: 28102005-28119838 Brachypodium distachyon
Bradi4g23380 5.0kb upstream 5.0kb upstream 5000 false Bd4: 28114839-28119838 Brachypodium distachyon
Bradi4g23380 5.0kb downstream 5.0kb downstream 17834 true Bd4: 28097005-28114838 Brachypodium distachyon
Bradi4g23380 5.0kb downstream 5.0kb downstream 5000 false Bd4: 28097005-28102004 Brachypodium distachyon
Bradi4g23380 10.0kb upstream 10.0kb upstream 22834 true Bd4: 28102005-28124838 Brachypodium distachyon
Bradi4g23380 10.0kb upstream 10.0kb upstream 10000 false Bd4: 28114839-28124838 Brachypodium distachyon
Bradi4g23380 10.0kb downstream 10.0kb downstream 22834 true Bd4: 28092005-28114838 Brachypodium distachyon
Bradi4g23380 10.0kb downstream 10.0kb downstream 10000 false Bd4: 28092005-28102004 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575363 5269 Grass View MSA
122047276 5273 Angiosperm View MSA
121346470 5274 Embryophyte View MSA
123428614 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.5        
cufflinks 0.89        
cufflinks 0.867        
cufflinks 0.751        
cufflinks 0.271       Low
cufflinks 0.837        
cufflinks 0.736        
cufflinks 0.742        
cufflinks 0.846        
cufflinks 0.519        
cufflinks 0.787        
cufflinks 0.85        
cufflinks 0.906        
cufflinks 0.643        
cufflinks 0.528        
cufflinks 0.881        
cufflinks 0.354        
cufflinks 0.811        
cufflinks 0.246       Low
cufflinks 0.154       Low
cufflinks 0.339        
cufflinks 0.966       High
cufflinks 0.731        
cufflinks 0.744        
cufflinks 0.713        
cufflinks 0.731        
cufflinks 0.801        
cufflinks 0.734        
cufflinks 0.794        
cufflinks 0.552        

0 Strain