Gene : Bradi2g55230 B. distachyon v3.1
Defline:  (1 of 46) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  6649
Name:  ? Bradi2g55230 Secondary Identifier:  ? PAC:32772680
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g55230 0.5kb upstream 0.5kb upstream 3654 true Bd2: 53685506-53689159 Brachypodium distachyon
Bradi2g55230 0.5kb upstream 0.5kb upstream 500 false Bd2: 53685506-53686005 Brachypodium distachyon
Bradi2g55230 0.5kb downstream 0.5kb downstream 3654 true Bd2: 53686006-53689659 Brachypodium distachyon
Bradi2g55230 0.5kb downstream 0.5kb downstream 500 false Bd2: 53689160-53689659 Brachypodium distachyon
Bradi2g55230 1.0kb upstream 1.0kb upstream 4154 true Bd2: 53685006-53689159 Brachypodium distachyon
Bradi2g55230 1.0kb upstream 1.0kb upstream 1000 false Bd2: 53685006-53686005 Brachypodium distachyon
Bradi2g55230 1.0kb downstream 1.0kb downstream 4154 true Bd2: 53686006-53690159 Brachypodium distachyon
Bradi2g55230 1.0kb downstream 1.0kb downstream 1000 false Bd2: 53689160-53690159 Brachypodium distachyon
Bradi2g55230 2.0kb upstream 2.0kb upstream 5154 true Bd2: 53684006-53689159 Brachypodium distachyon
Bradi2g55230 2.0kb upstream 2.0kb upstream 2000 false Bd2: 53684006-53686005 Brachypodium distachyon
Bradi2g55230 2.0kb downstream 2.0kb downstream 5154 true Bd2: 53686006-53691159 Brachypodium distachyon
Bradi2g55230 2.0kb downstream 2.0kb downstream 2000 false Bd2: 53689160-53691159 Brachypodium distachyon
Bradi2g55230 5.0kb upstream 5.0kb upstream 8154 true Bd2: 53681006-53689159 Brachypodium distachyon
Bradi2g55230 5.0kb upstream 5.0kb upstream 5000 false Bd2: 53681006-53686005 Brachypodium distachyon
Bradi2g55230 5.0kb downstream 5.0kb downstream 8154 true Bd2: 53686006-53694159 Brachypodium distachyon
Bradi2g55230 5.0kb downstream 5.0kb downstream 5000 false Bd2: 53689160-53694159 Brachypodium distachyon
Bradi2g55230 10.0kb upstream 10.0kb upstream 13154 true Bd2: 53676006-53689159 Brachypodium distachyon
Bradi2g55230 10.0kb upstream 10.0kb upstream 10000 false Bd2: 53676006-53686005 Brachypodium distachyon
Bradi2g55230 10.0kb downstream 10.0kb downstream 13154 true Bd2: 53686006-53699159 Brachypodium distachyon
Bradi2g55230 10.0kb downstream 10.0kb downstream 10000 false Bd2: 53689160-53699159 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026268 5273 Angiosperm View MSA
124578544 5269 Grass View MSA
121296253 5274 Embryophyte View MSA
123334450 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.379        
cufflinks 0.863       High
cufflinks 0.704        
cufflinks 0.662        
cufflinks 0.127       Low
cufflinks 0.448        
cufflinks 0.635        
cufflinks 0.322        
cufflinks 0.463        
cufflinks 0.302        
cufflinks 0.096       Low
cufflinks 0.342        
cufflinks 0.112       Low
cufflinks 0.068       Low
cufflinks 0.104       Low
cufflinks 0.351        
cufflinks 0.227        
cufflinks 1.076       High
cufflinks 0.463        
cufflinks 0.274        
cufflinks 0.46        
cufflinks 0.392        
cufflinks 0.305        
cufflinks 0.269        
cufflinks 0.498        
cufflinks 0.523        
cufflinks 0.228        
cufflinks 0.476        
cufflinks 0.331        
cufflinks 0.573        

0 Strain