Gene : Bradi2g55417 B. distachyon v3.1
Defline:  (1 of 1) 2.4.99.12 - Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase / Lipid IV(A) KDO transferase Genomic Order:  6673
Name:  ? Bradi2g55417 Secondary Identifier:  ? PAC:32775631
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon KDOSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g55417 0.5kb upstream 0.5kb upstream 6192 true Bd2: 53839957-53846148 Brachypodium distachyon
Bradi2g55417 0.5kb upstream 0.5kb upstream 500 false Bd2: 53845649-53846148 Brachypodium distachyon
Bradi2g55417 0.5kb downstream 0.5kb downstream 6192 true Bd2: 53839457-53845648 Brachypodium distachyon
Bradi2g55417 0.5kb downstream 0.5kb downstream 500 false Bd2: 53839457-53839956 Brachypodium distachyon
Bradi2g55417 1.0kb upstream 1.0kb upstream 6692 true Bd2: 53839957-53846648 Brachypodium distachyon
Bradi2g55417 1.0kb upstream 1.0kb upstream 1000 false Bd2: 53845649-53846648 Brachypodium distachyon
Bradi2g55417 1.0kb downstream 1.0kb downstream 6692 true Bd2: 53838957-53845648 Brachypodium distachyon
Bradi2g55417 1.0kb downstream 1.0kb downstream 1000 false Bd2: 53838957-53839956 Brachypodium distachyon
Bradi2g55417 2.0kb upstream 2.0kb upstream 7692 true Bd2: 53839957-53847648 Brachypodium distachyon
Bradi2g55417 2.0kb upstream 2.0kb upstream 2000 false Bd2: 53845649-53847648 Brachypodium distachyon
Bradi2g55417 2.0kb downstream 2.0kb downstream 7692 true Bd2: 53837957-53845648 Brachypodium distachyon
Bradi2g55417 2.0kb downstream 2.0kb downstream 2000 false Bd2: 53837957-53839956 Brachypodium distachyon
Bradi2g55417 5.0kb upstream 5.0kb upstream 10692 true Bd2: 53839957-53850648 Brachypodium distachyon
Bradi2g55417 5.0kb upstream 5.0kb upstream 5000 false Bd2: 53845649-53850648 Brachypodium distachyon
Bradi2g55417 5.0kb downstream 5.0kb downstream 10692 true Bd2: 53834957-53845648 Brachypodium distachyon
Bradi2g55417 5.0kb downstream 5.0kb downstream 5000 false Bd2: 53834957-53839956 Brachypodium distachyon
Bradi2g55417 10.0kb upstream 10.0kb upstream 15692 true Bd2: 53839957-53855648 Brachypodium distachyon
Bradi2g55417 10.0kb upstream 10.0kb upstream 10000 false Bd2: 53845649-53855648 Brachypodium distachyon
Bradi2g55417 10.0kb downstream 10.0kb downstream 15692 true Bd2: 53829957-53845648 Brachypodium distachyon
Bradi2g55417 10.0kb downstream 10.0kb downstream 10000 false Bd2: 53829957-53839956 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575901 5269 Grass View MSA
122042607 5273 Angiosperm View MSA
121344444 5274 Embryophyte View MSA
123380045 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.695        
cufflinks 0.716        
cufflinks 0.748        
cufflinks 0.646        
cufflinks 0.278       Low
cufflinks 0.615        
cufflinks 0.716        
cufflinks 0.52        
cufflinks 0.638        
cufflinks 0.617        
cufflinks 0.36        
cufflinks 0.438        
cufflinks 0.278       Low
cufflinks 0.256       Low
cufflinks 0.365        
cufflinks 0.607        
cufflinks 0.592        
cufflinks 0.791       High
cufflinks 0.479        
cufflinks 0.104     Low Low
cufflinks 0.599        
cufflinks 0.609        
cufflinks 0.498        
cufflinks 0.437        
cufflinks 0.634        
cufflinks 0.668        
cufflinks 0.143       Low
cufflinks 0.614        
cufflinks 0.562        
cufflinks 0.621        

0 Strain