Gene : Bradi4g20960 B. distachyon v3.1
Defline:  (1 of 1) PTHR22939//PTHR22939:SF95 - SERINE PROTEASE FAMILY S1C HTRA-RELATED // SERINE PROTEASE HTRA2, MITOCHONDRIAL Genomic Order:  2658
Name:  ? Bradi4g20960 Secondary Identifier:  ? PAC:32784886
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g20960 0.5kb upstream 0.5kb upstream 8001 true Bd4: 23970703-23978703 Brachypodium distachyon
Bradi4g20960 0.5kb upstream 0.5kb upstream 500 false Bd4: 23978204-23978703 Brachypodium distachyon
Bradi4g20960 0.5kb downstream 0.5kb downstream 8001 true Bd4: 23970203-23978203 Brachypodium distachyon
Bradi4g20960 0.5kb downstream 0.5kb downstream 500 false Bd4: 23970203-23970702 Brachypodium distachyon
Bradi4g20960 1.0kb upstream 1.0kb upstream 8501 true Bd4: 23970703-23979203 Brachypodium distachyon
Bradi4g20960 1.0kb upstream 1.0kb upstream 1000 false Bd4: 23978204-23979203 Brachypodium distachyon
Bradi4g20960 1.0kb downstream 1.0kb downstream 8501 true Bd4: 23969703-23978203 Brachypodium distachyon
Bradi4g20960 1.0kb downstream 1.0kb downstream 1000 false Bd4: 23969703-23970702 Brachypodium distachyon
Bradi4g20960 2.0kb upstream 2.0kb upstream 9501 true Bd4: 23970703-23980203 Brachypodium distachyon
Bradi4g20960 2.0kb upstream 2.0kb upstream 2000 false Bd4: 23978204-23980203 Brachypodium distachyon
Bradi4g20960 2.0kb downstream 2.0kb downstream 9501 true Bd4: 23968703-23978203 Brachypodium distachyon
Bradi4g20960 2.0kb downstream 2.0kb downstream 2000 false Bd4: 23968703-23970702 Brachypodium distachyon
Bradi4g20960 5.0kb upstream 5.0kb upstream 12501 true Bd4: 23970703-23983203 Brachypodium distachyon
Bradi4g20960 5.0kb upstream 5.0kb upstream 5000 false Bd4: 23978204-23983203 Brachypodium distachyon
Bradi4g20960 5.0kb downstream 5.0kb downstream 12501 true Bd4: 23965703-23978203 Brachypodium distachyon
Bradi4g20960 5.0kb downstream 5.0kb downstream 5000 false Bd4: 23965703-23970702 Brachypodium distachyon
Bradi4g20960 10.0kb upstream 10.0kb upstream 17501 true Bd4: 23970703-23988203 Brachypodium distachyon
Bradi4g20960 10.0kb upstream 10.0kb upstream 10000 false Bd4: 23978204-23988203 Brachypodium distachyon
Bradi4g20960 10.0kb downstream 10.0kb downstream 17501 true Bd4: 23960703-23978203 Brachypodium distachyon
Bradi4g20960 10.0kb downstream 10.0kb downstream 10000 false Bd4: 23960703-23970702 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574922 5269 Grass View MSA
122045030 5273 Angiosperm View MSA
121344976 5274 Embryophyte View MSA
123424771 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.127        
cufflinks 0.212        
cufflinks 0.21        
cufflinks 0.232        
cufflinks 0.186        
cufflinks 0.228        
cufflinks 0.178        
cufflinks 0.319        
cufflinks 0.309        
cufflinks 0.225        
cufflinks 0.124        
cufflinks 0.26        
cufflinks 0.079       Low
cufflinks 0.092       Low
cufflinks 0.152        
cufflinks 0.21        
cufflinks 0.289        
cufflinks 0.291        
cufflinks 0.143     Low  
cufflinks 0.154        
cufflinks 0.192        
cufflinks 0.292        
cufflinks 0.348        
cufflinks 0.241        
cufflinks 0.243        
cufflinks 0.225        
cufflinks 0.064     Low Low
cufflinks 0.207        
cufflinks 0.258        
cufflinks 0.235        

0 Strain