Gene : Bradi2g59380 B. distachyon v3.1
Defline:  (1 of 2) PTHR11062//PTHR11062:SF105 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED // BETA-1,4-XYLOSYLTRANSFERASE IRX10-RELATED Genomic Order:  7186
Name:  ? Bradi2g59380 Secondary Identifier:  ? PAC:32780388
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5980 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g59380 0.5kb upstream 0.5kb upstream 4100 true Bd2: 56892696-56896795 Brachypodium distachyon
Bradi2g59380 0.5kb upstream 0.5kb upstream 500 false Bd2: 56896296-56896795 Brachypodium distachyon
Bradi2g59380 0.5kb downstream 0.5kb downstream 4100 true Bd2: 56892196-56896295 Brachypodium distachyon
Bradi2g59380 0.5kb downstream 0.5kb downstream 500 false Bd2: 56892196-56892695 Brachypodium distachyon
Bradi2g59380 1.0kb upstream 1.0kb upstream 4600 true Bd2: 56892696-56897295 Brachypodium distachyon
Bradi2g59380 1.0kb upstream 1.0kb upstream 1000 false Bd2: 56896296-56897295 Brachypodium distachyon
Bradi2g59380 1.0kb downstream 1.0kb downstream 4600 true Bd2: 56891696-56896295 Brachypodium distachyon
Bradi2g59380 1.0kb downstream 1.0kb downstream 1000 false Bd2: 56891696-56892695 Brachypodium distachyon
Bradi2g59380 2.0kb upstream 2.0kb upstream 5600 true Bd2: 56892696-56898295 Brachypodium distachyon
Bradi2g59380 2.0kb upstream 2.0kb upstream 2000 false Bd2: 56896296-56898295 Brachypodium distachyon
Bradi2g59380 2.0kb downstream 2.0kb downstream 5600 true Bd2: 56890696-56896295 Brachypodium distachyon
Bradi2g59380 2.0kb downstream 2.0kb downstream 2000 false Bd2: 56890696-56892695 Brachypodium distachyon
Bradi2g59380 5.0kb upstream 5.0kb upstream 8600 true Bd2: 56892696-56901295 Brachypodium distachyon
Bradi2g59380 5.0kb upstream 5.0kb upstream 5000 false Bd2: 56896296-56901295 Brachypodium distachyon
Bradi2g59380 5.0kb downstream 5.0kb downstream 8600 true Bd2: 56887696-56896295 Brachypodium distachyon
Bradi2g59380 5.0kb downstream 5.0kb downstream 5000 false Bd2: 56887696-56892695 Brachypodium distachyon
Bradi2g59380 10.0kb upstream 10.0kb upstream 13600 true Bd2: 56892696-56906295 Brachypodium distachyon
Bradi2g59380 10.0kb upstream 10.0kb upstream 10000 false Bd2: 56896296-56906295 Brachypodium distachyon
Bradi2g59380 10.0kb downstream 10.0kb downstream 13600 true Bd2: 56882696-56896295 Brachypodium distachyon
Bradi2g59380 10.0kb downstream 10.0kb downstream 10000 false Bd2: 56882696-56892695 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993246 5273 Angiosperm View MSA
124576376 5269 Grass View MSA
121263540 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.229        
cufflinks 1.618        
cufflinks 1.567        
cufflinks 1.738        
cufflinks 1.041        
cufflinks 1.44        
cufflinks 1.679        
cufflinks 1.709        
cufflinks 1.645        
cufflinks 1.381        
cufflinks 0.104       Low
cufflinks 1.347        
cufflinks 0.37       Low
cufflinks 0.085       Low
cufflinks 0.916        
cufflinks 1.427        
cufflinks 2.116        
cufflinks 4.296       High
cufflinks 2.167        
cufflinks 0.534        
cufflinks 3.51       High
cufflinks 1.489        
cufflinks 1.786        
cufflinks 1.52        
cufflinks 1.545        
cufflinks 1.408        
cufflinks 0.055     Low Low
cufflinks 1.355        
cufflinks 1.419        
cufflinks 2.623        

0 Strain