Gene : Bradi3g05490 B. distachyon v3.1
Defline:  (1 of 1) 1.2.1.24 - Succinate-semialdehyde dehydrogenase (NAD(+)) Genomic Order:  672
Name:  ? Bradi3g05490 Secondary Identifier:  ? PAC:32814900
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-4321 Brachypodium distachyon pathologic  
Bdistachyon PWY-6473 Brachypodium distachyon pathologic  
Bdistachyon PWY-6535 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g05490 0.5kb upstream 0.5kb upstream 9104 true Bd3: 3867284-3876387 Brachypodium distachyon
Bradi3g05490 0.5kb upstream 0.5kb upstream 500 false Bd3: 3867284-3867783 Brachypodium distachyon
Bradi3g05490 0.5kb downstream 0.5kb downstream 9104 true Bd3: 3867784-3876887 Brachypodium distachyon
Bradi3g05490 0.5kb downstream 0.5kb downstream 500 false Bd3: 3876388-3876887 Brachypodium distachyon
Bradi3g05490 1.0kb upstream 1.0kb upstream 9604 true Bd3: 3866784-3876387 Brachypodium distachyon
Bradi3g05490 1.0kb upstream 1.0kb upstream 1000 false Bd3: 3866784-3867783 Brachypodium distachyon
Bradi3g05490 1.0kb downstream 1.0kb downstream 9604 true Bd3: 3867784-3877387 Brachypodium distachyon
Bradi3g05490 1.0kb downstream 1.0kb downstream 1000 false Bd3: 3876388-3877387 Brachypodium distachyon
Bradi3g05490 2.0kb upstream 2.0kb upstream 10604 true Bd3: 3865784-3876387 Brachypodium distachyon
Bradi3g05490 2.0kb upstream 2.0kb upstream 2000 false Bd3: 3865784-3867783 Brachypodium distachyon
Bradi3g05490 2.0kb downstream 2.0kb downstream 10604 true Bd3: 3867784-3878387 Brachypodium distachyon
Bradi3g05490 2.0kb downstream 2.0kb downstream 2000 false Bd3: 3876388-3878387 Brachypodium distachyon
Bradi3g05490 5.0kb upstream 5.0kb upstream 13604 true Bd3: 3862784-3876387 Brachypodium distachyon
Bradi3g05490 5.0kb upstream 5.0kb upstream 5000 false Bd3: 3862784-3867783 Brachypodium distachyon
Bradi3g05490 5.0kb downstream 5.0kb downstream 13604 true Bd3: 3867784-3881387 Brachypodium distachyon
Bradi3g05490 5.0kb downstream 5.0kb downstream 5000 false Bd3: 3876388-3881387 Brachypodium distachyon
Bradi3g05490 10.0kb upstream 10.0kb upstream 18604 true Bd3: 3857784-3876387 Brachypodium distachyon
Bradi3g05490 10.0kb upstream 10.0kb upstream 10000 false Bd3: 3857784-3867783 Brachypodium distachyon
Bradi3g05490 10.0kb downstream 10.0kb downstream 18604 true Bd3: 3867784-3886387 Brachypodium distachyon
Bradi3g05490 10.0kb downstream 10.0kb downstream 10000 false Bd3: 3876388-3886387 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124585020 5269 Grass View MSA
122045886 5273 Angiosperm View MSA
121345720 5274 Embryophyte View MSA
123427690 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.551        
cufflinks 8.97        
cufflinks 8.651        
cufflinks 8.546        
cufflinks 9.884     High  
cufflinks 7.645        
cufflinks 7.371        
cufflinks 8.238        
cufflinks 8.652        
cufflinks 7.601        
cufflinks 8.401        
cufflinks 8.492        
cufflinks 6.683        
cufflinks 7.026        
cufflinks 8.503        
cufflinks 7.684        
cufflinks 8.941        
cufflinks 14.907     High High
cufflinks 13.551     High High
cufflinks 14.54     High High
cufflinks 4.352       Low
cufflinks 8.881        
cufflinks 9.545     High  
cufflinks 9.7     High  
cufflinks 8.096        
cufflinks 8.404        
cufflinks 5.955       Low
cufflinks 8.274        
cufflinks 7.978        
cufflinks 7.372        

0 Strain