Gene : Bradi3g05300 B. distachyon v3.1
Defline:  (1 of 2) PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  654
Name:  ? Bradi3g05300 Secondary Identifier:  ? PAC:32822872
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ANAEROFRUCAT-PWY Brachypodium distachyon pathologic  
Bdistachyon ANAGLYCOLYSIS-PWY Brachypodium distachyon pathologic  
Bdistachyon GLUCONEO-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-1042 Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon SUCSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g05300 0.5kb upstream 0.5kb upstream 5951 true Bd3: 3724621-3730571 Brachypodium distachyon
Bradi3g05300 0.5kb upstream 0.5kb upstream 500 false Bd3: 3724621-3725120 Brachypodium distachyon
Bradi3g05300 0.5kb downstream 0.5kb downstream 5951 true Bd3: 3725121-3731071 Brachypodium distachyon
Bradi3g05300 0.5kb downstream 0.5kb downstream 500 false Bd3: 3730572-3731071 Brachypodium distachyon
Bradi3g05300 1.0kb upstream 1.0kb upstream 6451 true Bd3: 3724121-3730571 Brachypodium distachyon
Bradi3g05300 1.0kb upstream 1.0kb upstream 1000 false Bd3: 3724121-3725120 Brachypodium distachyon
Bradi3g05300 1.0kb downstream 1.0kb downstream 6451 true Bd3: 3725121-3731571 Brachypodium distachyon
Bradi3g05300 1.0kb downstream 1.0kb downstream 1000 false Bd3: 3730572-3731571 Brachypodium distachyon
Bradi3g05300 2.0kb upstream 2.0kb upstream 7451 true Bd3: 3723121-3730571 Brachypodium distachyon
Bradi3g05300 2.0kb upstream 2.0kb upstream 2000 false Bd3: 3723121-3725120 Brachypodium distachyon
Bradi3g05300 2.0kb downstream 2.0kb downstream 7451 true Bd3: 3725121-3732571 Brachypodium distachyon
Bradi3g05300 2.0kb downstream 2.0kb downstream 2000 false Bd3: 3730572-3732571 Brachypodium distachyon
Bradi3g05300 5.0kb upstream 5.0kb upstream 10451 true Bd3: 3720121-3730571 Brachypodium distachyon
Bradi3g05300 5.0kb upstream 5.0kb upstream 5000 false Bd3: 3720121-3725120 Brachypodium distachyon
Bradi3g05300 5.0kb downstream 5.0kb downstream 10451 true Bd3: 3725121-3735571 Brachypodium distachyon
Bradi3g05300 5.0kb downstream 5.0kb downstream 5000 false Bd3: 3730572-3735571 Brachypodium distachyon
Bradi3g05300 10.0kb upstream 10.0kb upstream 15451 true Bd3: 3715121-3730571 Brachypodium distachyon
Bradi3g05300 10.0kb upstream 10.0kb upstream 10000 false Bd3: 3715121-3725120 Brachypodium distachyon
Bradi3g05300 10.0kb downstream 10.0kb downstream 15451 true Bd3: 3725121-3740571 Brachypodium distachyon
Bradi3g05300 10.0kb downstream 10.0kb downstream 10000 false Bd3: 3730572-3740571 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572618 5269 Grass View MSA
122042179 5273 Angiosperm View MSA
121345581 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.807        
cufflinks 6.781        
cufflinks 5.487        
cufflinks 5.12        
cufflinks 2.661        
cufflinks 5.821        
cufflinks 5.63        
cufflinks 4.768        
cufflinks 5.027        
cufflinks 2.825        
cufflinks 0.902       Low
cufflinks 5.515        
cufflinks 1.35       Low
cufflinks 0.741       Low
cufflinks 2.971        
cufflinks 7.031        
cufflinks 3.915        
cufflinks 15.053     High High
cufflinks 3.841        
cufflinks 0.882       Low
cufflinks 5.006        
cufflinks 5.43        
cufflinks 4.121        
cufflinks 4.09        
cufflinks 4.342        
cufflinks 4.287        
cufflinks 0.968       Low
cufflinks 3.546        
cufflinks 4.153        
cufflinks 6.408        

0 Strain