Gene : Bradi3g02817 B. distachyon v3.1
Defline:  (1 of 1) PTHR15495//PTHR15495:SF17 - NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED Genomic Order:  327
Name:  ? Bradi3g02817 Secondary Identifier:  ? PAC:32819553
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon LIPAS-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g02817 0.5kb upstream 0.5kb upstream 3864 true Bd3: 1789395-1793258 Brachypodium distachyon
Bradi3g02817 0.5kb upstream 0.5kb upstream 500 false Bd3: 1789395-1789894 Brachypodium distachyon
Bradi3g02817 0.5kb downstream 0.5kb downstream 3864 true Bd3: 1789895-1793758 Brachypodium distachyon
Bradi3g02817 0.5kb downstream 0.5kb downstream 500 false Bd3: 1793259-1793758 Brachypodium distachyon
Bradi3g02817 1.0kb upstream 1.0kb upstream 4364 true Bd3: 1788895-1793258 Brachypodium distachyon
Bradi3g02817 1.0kb upstream 1.0kb upstream 1000 false Bd3: 1788895-1789894 Brachypodium distachyon
Bradi3g02817 1.0kb downstream 1.0kb downstream 4364 true Bd3: 1789895-1794258 Brachypodium distachyon
Bradi3g02817 1.0kb downstream 1.0kb downstream 1000 false Bd3: 1793259-1794258 Brachypodium distachyon
Bradi3g02817 2.0kb upstream 2.0kb upstream 5364 true Bd3: 1787895-1793258 Brachypodium distachyon
Bradi3g02817 2.0kb upstream 2.0kb upstream 2000 false Bd3: 1787895-1789894 Brachypodium distachyon
Bradi3g02817 2.0kb downstream 2.0kb downstream 5364 true Bd3: 1789895-1795258 Brachypodium distachyon
Bradi3g02817 2.0kb downstream 2.0kb downstream 2000 false Bd3: 1793259-1795258 Brachypodium distachyon
Bradi3g02817 5.0kb upstream 5.0kb upstream 8364 true Bd3: 1784895-1793258 Brachypodium distachyon
Bradi3g02817 5.0kb upstream 5.0kb upstream 5000 false Bd3: 1784895-1789894 Brachypodium distachyon
Bradi3g02817 5.0kb downstream 5.0kb downstream 8364 true Bd3: 1789895-1798258 Brachypodium distachyon
Bradi3g02817 5.0kb downstream 5.0kb downstream 5000 false Bd3: 1793259-1798258 Brachypodium distachyon
Bradi3g02817 10.0kb upstream 10.0kb upstream 13364 true Bd3: 1779895-1793258 Brachypodium distachyon
Bradi3g02817 10.0kb upstream 10.0kb upstream 10000 false Bd3: 1779895-1789894 Brachypodium distachyon
Bradi3g02817 10.0kb downstream 10.0kb downstream 13364 true Bd3: 1789895-1803258 Brachypodium distachyon
Bradi3g02817 10.0kb downstream 10.0kb downstream 10000 false Bd3: 1793259-1803258 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574918 5269 Grass View MSA
122045656 5273 Angiosperm View MSA
121347339 5274 Embryophyte View MSA
123426841 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.149        
cufflinks 2.54        
cufflinks 1.581        
cufflinks 2.366        
cufflinks 2.581        
cufflinks 2.995        
cufflinks 2.697        
cufflinks 3.076        
cufflinks 3.028        
cufflinks 1.867        
cufflinks 5.015       High
cufflinks 2.9        
cufflinks 5.529       High
cufflinks 6.031       High
cufflinks 3.375        
cufflinks 2.953        
cufflinks 3.158        
cufflinks 0.101     Low Low
cufflinks 1.11        
cufflinks 1.636        
cufflinks 0.971        
cufflinks 1.731        
cufflinks 3.25        
cufflinks 3.42        
cufflinks 3.321        
cufflinks 1.63        
cufflinks 5.556       High
cufflinks 1.572        
cufflinks 1.559        
cufflinks 0.481       Low

0 Strain