Gene : Bradi3g03080 B. distachyon v3.1
Defline:  (1 of 1) 1.4.3.16 - L-aspartate oxidase / LASPO Genomic Order:  355
Name:  ? Bradi3g03080 Secondary Identifier:  ? PAC:32816597
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PYRIDNUCSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g03080 0.5kb upstream 0.5kb upstream 5584 true Bd3: 1970852-1976435 Brachypodium distachyon
Bradi3g03080 0.5kb upstream 0.5kb upstream 500 false Bd3: 1970852-1971351 Brachypodium distachyon
Bradi3g03080 0.5kb downstream 0.5kb downstream 5584 true Bd3: 1971352-1976935 Brachypodium distachyon
Bradi3g03080 0.5kb downstream 0.5kb downstream 500 false Bd3: 1976436-1976935 Brachypodium distachyon
Bradi3g03080 1.0kb upstream 1.0kb upstream 6084 true Bd3: 1970352-1976435 Brachypodium distachyon
Bradi3g03080 1.0kb upstream 1.0kb upstream 1000 false Bd3: 1970352-1971351 Brachypodium distachyon
Bradi3g03080 1.0kb downstream 1.0kb downstream 6084 true Bd3: 1971352-1977435 Brachypodium distachyon
Bradi3g03080 1.0kb downstream 1.0kb downstream 1000 false Bd3: 1976436-1977435 Brachypodium distachyon
Bradi3g03080 2.0kb upstream 2.0kb upstream 7084 true Bd3: 1969352-1976435 Brachypodium distachyon
Bradi3g03080 2.0kb upstream 2.0kb upstream 2000 false Bd3: 1969352-1971351 Brachypodium distachyon
Bradi3g03080 2.0kb downstream 2.0kb downstream 7084 true Bd3: 1971352-1978435 Brachypodium distachyon
Bradi3g03080 2.0kb downstream 2.0kb downstream 2000 false Bd3: 1976436-1978435 Brachypodium distachyon
Bradi3g03080 5.0kb upstream 5.0kb upstream 10084 true Bd3: 1966352-1976435 Brachypodium distachyon
Bradi3g03080 5.0kb upstream 5.0kb upstream 5000 false Bd3: 1966352-1971351 Brachypodium distachyon
Bradi3g03080 5.0kb downstream 5.0kb downstream 10084 true Bd3: 1971352-1981435 Brachypodium distachyon
Bradi3g03080 5.0kb downstream 5.0kb downstream 5000 false Bd3: 1976436-1981435 Brachypodium distachyon
Bradi3g03080 10.0kb upstream 10.0kb upstream 15084 true Bd3: 1961352-1976435 Brachypodium distachyon
Bradi3g03080 10.0kb upstream 10.0kb upstream 10000 false Bd3: 1961352-1971351 Brachypodium distachyon
Bradi3g03080 10.0kb downstream 10.0kb downstream 15084 true Bd3: 1971352-1986435 Brachypodium distachyon
Bradi3g03080 10.0kb downstream 10.0kb downstream 10000 false Bd3: 1976436-1986435 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569754 5269 Grass View MSA
122044025 5273 Angiosperm View MSA
121345783 5274 Embryophyte View MSA
123424759 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.071       High
cufflinks 1.341        
cufflinks 1.672        
cufflinks 1.311        
cufflinks 1.503        
cufflinks 1.792        
cufflinks 1.193        
cufflinks 2.645        
cufflinks 1.875        
cufflinks 2.135        
cufflinks 4.013       High
cufflinks 3.09        
cufflinks 3.207        
cufflinks 3.11        
cufflinks 6.155       High
cufflinks 2.401        
cufflinks 1.725        
cufflinks 2.26        
cufflinks 0.82       Low
cufflinks 0.567       Low
cufflinks 1.531        
cufflinks 2.631        
cufflinks 1.79        
cufflinks 1.673        
cufflinks 1.343        
cufflinks 1.552        
cufflinks 2.472        
cufflinks 1.782        
cufflinks 2.152        
cufflinks 1.506        

0 Strain