Gene : Bradi3g08060 B. distachyon v3.1
Defline:  (1 of 2) PTHR10625//PTHR10625:SF127 - HISTONE DEACETYLASE // SUBFAMILY NOT NAMED Genomic Order:  1025
Name:  ? Bradi3g08060 Secondary Identifier:  ? PAC:32815121
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g08060 0.5kb upstream 0.5kb upstream 6805 true Bd3: 6276567-6283371 Brachypodium distachyon
Bradi3g08060 0.5kb upstream 0.5kb upstream 500 false Bd3: 6276567-6277066 Brachypodium distachyon
Bradi3g08060 0.5kb downstream 0.5kb downstream 6805 true Bd3: 6277067-6283871 Brachypodium distachyon
Bradi3g08060 0.5kb downstream 0.5kb downstream 500 false Bd3: 6283372-6283871 Brachypodium distachyon
Bradi3g08060 1.0kb upstream 1.0kb upstream 7305 true Bd3: 6276067-6283371 Brachypodium distachyon
Bradi3g08060 1.0kb upstream 1.0kb upstream 1000 false Bd3: 6276067-6277066 Brachypodium distachyon
Bradi3g08060 1.0kb downstream 1.0kb downstream 7305 true Bd3: 6277067-6284371 Brachypodium distachyon
Bradi3g08060 1.0kb downstream 1.0kb downstream 1000 false Bd3: 6283372-6284371 Brachypodium distachyon
Bradi3g08060 2.0kb upstream 2.0kb upstream 8305 true Bd3: 6275067-6283371 Brachypodium distachyon
Bradi3g08060 2.0kb upstream 2.0kb upstream 2000 false Bd3: 6275067-6277066 Brachypodium distachyon
Bradi3g08060 2.0kb downstream 2.0kb downstream 8305 true Bd3: 6277067-6285371 Brachypodium distachyon
Bradi3g08060 2.0kb downstream 2.0kb downstream 2000 false Bd3: 6283372-6285371 Brachypodium distachyon
Bradi3g08060 5.0kb upstream 5.0kb upstream 11305 true Bd3: 6272067-6283371 Brachypodium distachyon
Bradi3g08060 5.0kb upstream 5.0kb upstream 5000 false Bd3: 6272067-6277066 Brachypodium distachyon
Bradi3g08060 5.0kb downstream 5.0kb downstream 11305 true Bd3: 6277067-6288371 Brachypodium distachyon
Bradi3g08060 5.0kb downstream 5.0kb downstream 5000 false Bd3: 6283372-6288371 Brachypodium distachyon
Bradi3g08060 10.0kb upstream 10.0kb upstream 16305 true Bd3: 6267067-6283371 Brachypodium distachyon
Bradi3g08060 10.0kb upstream 10.0kb upstream 10000 false Bd3: 6267067-6277066 Brachypodium distachyon
Bradi3g08060 10.0kb downstream 10.0kb downstream 16305 true Bd3: 6277067-6293371 Brachypodium distachyon
Bradi3g08060 10.0kb downstream 10.0kb downstream 10000 false Bd3: 6283372-6293371 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586021 5269 Grass View MSA
122042529 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.698        
cufflinks 8.444        
cufflinks 8.558        
cufflinks 8.204        
cufflinks 5.385       Low
cufflinks 7.579        
cufflinks 7.756        
cufflinks 7.446        
cufflinks 7.696        
cufflinks 7.413        
cufflinks 7.605        
cufflinks 6.952        
cufflinks 6.105       Low
cufflinks 6.834        
cufflinks 6.792        
cufflinks 7.807        
cufflinks 7.709        
cufflinks 12.154     High High
cufflinks 7.42        
cufflinks 10.127       High
cufflinks 10.996       High
cufflinks 7.8        
cufflinks 6.789        
cufflinks 7.718        
cufflinks 7.512        
cufflinks 8.807        
cufflinks 8.921     High  
cufflinks 8.407        
cufflinks 7.651        
cufflinks 8.973        

0 Strain