Gene : Bradi3g06556 B. distachyon v3.1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  817
Name:  ? Bradi3g06556 Secondary Identifier:  ? PAC:32822844
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g06556 0.5kb upstream 0.5kb upstream 4209 true Bd3: 4747697-4751905 Brachypodium distachyon
Bradi3g06556 0.5kb upstream 0.5kb upstream 500 false Bd3: 4751406-4751905 Brachypodium distachyon
Bradi3g06556 0.5kb downstream 0.5kb downstream 4209 true Bd3: 4747197-4751405 Brachypodium distachyon
Bradi3g06556 0.5kb downstream 0.5kb downstream 500 false Bd3: 4747197-4747696 Brachypodium distachyon
Bradi3g06556 1.0kb upstream 1.0kb upstream 4709 true Bd3: 4747697-4752405 Brachypodium distachyon
Bradi3g06556 1.0kb upstream 1.0kb upstream 1000 false Bd3: 4751406-4752405 Brachypodium distachyon
Bradi3g06556 1.0kb downstream 1.0kb downstream 4709 true Bd3: 4746697-4751405 Brachypodium distachyon
Bradi3g06556 1.0kb downstream 1.0kb downstream 1000 false Bd3: 4746697-4747696 Brachypodium distachyon
Bradi3g06556 2.0kb upstream 2.0kb upstream 5709 true Bd3: 4747697-4753405 Brachypodium distachyon
Bradi3g06556 2.0kb upstream 2.0kb upstream 2000 false Bd3: 4751406-4753405 Brachypodium distachyon
Bradi3g06556 2.0kb downstream 2.0kb downstream 5709 true Bd3: 4745697-4751405 Brachypodium distachyon
Bradi3g06556 2.0kb downstream 2.0kb downstream 2000 false Bd3: 4745697-4747696 Brachypodium distachyon
Bradi3g06556 5.0kb upstream 5.0kb upstream 8709 true Bd3: 4747697-4756405 Brachypodium distachyon
Bradi3g06556 5.0kb upstream 5.0kb upstream 5000 false Bd3: 4751406-4756405 Brachypodium distachyon
Bradi3g06556 5.0kb downstream 5.0kb downstream 8709 true Bd3: 4742697-4751405 Brachypodium distachyon
Bradi3g06556 5.0kb downstream 5.0kb downstream 5000 false Bd3: 4742697-4747696 Brachypodium distachyon
Bradi3g06556 10.0kb upstream 10.0kb upstream 13709 true Bd3: 4747697-4761405 Brachypodium distachyon
Bradi3g06556 10.0kb upstream 10.0kb upstream 10000 false Bd3: 4751406-4761405 Brachypodium distachyon
Bradi3g06556 10.0kb downstream 10.0kb downstream 13709 true Bd3: 4737697-4751405 Brachypodium distachyon
Bradi3g06556 10.0kb downstream 10.0kb downstream 10000 false Bd3: 4737697-4747696 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027025 5273 Angiosperm View MSA
124586891 5269 Grass View MSA
121296748 5274 Embryophyte View MSA
123334866 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.03        
cufflinks 2.539        
cufflinks 3.445        
cufflinks 2.967        
cufflinks 3.866        
cufflinks 2.117        
cufflinks 2.465        
cufflinks 2.808        
cufflinks 2.358        
cufflinks 5.608       High
cufflinks 3.462        
cufflinks 2.177        
cufflinks 1.876       Low
cufflinks 1.794       Low
cufflinks 2.884        
cufflinks 2.82        
cufflinks 2.251        
cufflinks 2.307        
cufflinks 6.961       High
cufflinks 12.213     High High
cufflinks 3.09        
cufflinks 3.846        
cufflinks 3.026        
cufflinks 1.957       Low
cufflinks 2.458        
cufflinks 3.96        
cufflinks 1.556       Low
cufflinks 4.222        
cufflinks 4.098        
cufflinks 3.349        

0 Strain