Gene : Bradi3g14040 B. distachyon v3.1
Defline:  (1 of 3) PTHR10836//PTHR10836:SF58 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  1739
Name:  ? Bradi3g14040 Secondary Identifier:  ? PAC:32815152
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ANAEROFRUCAT-PWY Brachypodium distachyon pathologic  
Bdistachyon ANAGLYCOLYSIS-PWY Brachypodium distachyon pathologic  
Bdistachyon GLUCONEO-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-1042 Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon SUCSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g14040 0.5kb upstream 0.5kb upstream 3969 true Bd3: 12511124-12515092 Brachypodium distachyon
Bradi3g14040 0.5kb upstream 0.5kb upstream 500 false Bd3: 12514593-12515092 Brachypodium distachyon
Bradi3g14040 0.5kb downstream 0.5kb downstream 3969 true Bd3: 12510624-12514592 Brachypodium distachyon
Bradi3g14040 0.5kb downstream 0.5kb downstream 500 false Bd3: 12510624-12511123 Brachypodium distachyon
Bradi3g14040 1.0kb upstream 1.0kb upstream 4469 true Bd3: 12511124-12515592 Brachypodium distachyon
Bradi3g14040 1.0kb upstream 1.0kb upstream 1000 false Bd3: 12514593-12515592 Brachypodium distachyon
Bradi3g14040 1.0kb downstream 1.0kb downstream 4469 true Bd3: 12510124-12514592 Brachypodium distachyon
Bradi3g14040 1.0kb downstream 1.0kb downstream 1000 false Bd3: 12510124-12511123 Brachypodium distachyon
Bradi3g14040 2.0kb upstream 2.0kb upstream 5469 true Bd3: 12511124-12516592 Brachypodium distachyon
Bradi3g14040 2.0kb upstream 2.0kb upstream 2000 false Bd3: 12514593-12516592 Brachypodium distachyon
Bradi3g14040 2.0kb downstream 2.0kb downstream 5469 true Bd3: 12509124-12514592 Brachypodium distachyon
Bradi3g14040 2.0kb downstream 2.0kb downstream 2000 false Bd3: 12509124-12511123 Brachypodium distachyon
Bradi3g14040 5.0kb upstream 5.0kb upstream 8469 true Bd3: 12511124-12519592 Brachypodium distachyon
Bradi3g14040 5.0kb upstream 5.0kb upstream 5000 false Bd3: 12514593-12519592 Brachypodium distachyon
Bradi3g14040 5.0kb downstream 5.0kb downstream 8469 true Bd3: 12506124-12514592 Brachypodium distachyon
Bradi3g14040 5.0kb downstream 5.0kb downstream 5000 false Bd3: 12506124-12511123 Brachypodium distachyon
Bradi3g14040 10.0kb upstream 10.0kb upstream 13469 true Bd3: 12511124-12524592 Brachypodium distachyon
Bradi3g14040 10.0kb upstream 10.0kb upstream 10000 false Bd3: 12514593-12524592 Brachypodium distachyon
Bradi3g14040 10.0kb downstream 10.0kb downstream 13469 true Bd3: 12501124-12514592 Brachypodium distachyon
Bradi3g14040 10.0kb downstream 10.0kb downstream 10000 false Bd3: 12501124-12511123 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589376 5269 Grass View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.735     High  
cufflinks 35.66     High  
cufflinks 32.26     High  
cufflinks 31.27     High  
cufflinks 24.405     High  
cufflinks 31.533     High  
cufflinks 35.138     High  
cufflinks 27.872     High  
cufflinks 27.974     High  
cufflinks 17.572     High  
cufflinks 13.497     High Low
cufflinks 31.985     High  
cufflinks 10.886     High Low
cufflinks 11.732     High Low
cufflinks 18.278     High  
cufflinks 36.716     High  
cufflinks 34.635     High  
cufflinks 99.333     High High
cufflinks 38.832     High  
cufflinks 12.349     High Low
cufflinks 49.269     High High
cufflinks 27.905     High  
cufflinks 27.289     High  
cufflinks 28.967     High  
cufflinks 27.85     High  
cufflinks 26.406     High  
cufflinks 13.106     High Low
cufflinks 23.856     High  
cufflinks 25.614     High  
cufflinks 55.276     High High

0 Strain