Gene : Bradi3g14330 B. distachyon v3.1
Defline:  (1 of 1) 6.2.1.26 - o-succinylbenzoate--CoA ligase / OSB-CoA synthetase Genomic Order:  1776
Name:  ? Bradi3g14330 Secondary Identifier:  ? PAC:32821142
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5837 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g14330 0.5kb upstream 0.5kb upstream 4470 true Bd3: 12784879-12789348 Brachypodium distachyon
Bradi3g14330 0.5kb upstream 0.5kb upstream 500 false Bd3: 12788849-12789348 Brachypodium distachyon
Bradi3g14330 0.5kb downstream 0.5kb downstream 4470 true Bd3: 12784379-12788848 Brachypodium distachyon
Bradi3g14330 0.5kb downstream 0.5kb downstream 500 false Bd3: 12784379-12784878 Brachypodium distachyon
Bradi3g14330 1.0kb upstream 1.0kb upstream 4970 true Bd3: 12784879-12789848 Brachypodium distachyon
Bradi3g14330 1.0kb upstream 1.0kb upstream 1000 false Bd3: 12788849-12789848 Brachypodium distachyon
Bradi3g14330 1.0kb downstream 1.0kb downstream 4970 true Bd3: 12783879-12788848 Brachypodium distachyon
Bradi3g14330 1.0kb downstream 1.0kb downstream 1000 false Bd3: 12783879-12784878 Brachypodium distachyon
Bradi3g14330 2.0kb upstream 2.0kb upstream 5970 true Bd3: 12784879-12790848 Brachypodium distachyon
Bradi3g14330 2.0kb upstream 2.0kb upstream 2000 false Bd3: 12788849-12790848 Brachypodium distachyon
Bradi3g14330 2.0kb downstream 2.0kb downstream 5970 true Bd3: 12782879-12788848 Brachypodium distachyon
Bradi3g14330 2.0kb downstream 2.0kb downstream 2000 false Bd3: 12782879-12784878 Brachypodium distachyon
Bradi3g14330 5.0kb upstream 5.0kb upstream 8970 true Bd3: 12784879-12793848 Brachypodium distachyon
Bradi3g14330 5.0kb upstream 5.0kb upstream 5000 false Bd3: 12788849-12793848 Brachypodium distachyon
Bradi3g14330 5.0kb downstream 5.0kb downstream 8970 true Bd3: 12779879-12788848 Brachypodium distachyon
Bradi3g14330 5.0kb downstream 5.0kb downstream 5000 false Bd3: 12779879-12784878 Brachypodium distachyon
Bradi3g14330 10.0kb upstream 10.0kb upstream 13970 true Bd3: 12784879-12798848 Brachypodium distachyon
Bradi3g14330 10.0kb upstream 10.0kb upstream 10000 false Bd3: 12788849-12798848 Brachypodium distachyon
Bradi3g14330 10.0kb downstream 10.0kb downstream 13970 true Bd3: 12774879-12788848 Brachypodium distachyon
Bradi3g14330 10.0kb downstream 10.0kb downstream 10000 false Bd3: 12774879-12784878 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581265 5269 Grass View MSA
122042580 5273 Angiosperm View MSA
121346156 5274 Embryophyte View MSA
123427881 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.943        
cufflinks 3.25        
cufflinks 2.292        
cufflinks 3.109        
cufflinks 3.927        
cufflinks 5.784        
cufflinks 3.737        
cufflinks 5.48        
cufflinks 5.599        
cufflinks 5.323        
cufflinks 3.64        
cufflinks 7.351       High
cufflinks 9.132     High High
cufflinks 6.204        
cufflinks 5.606        
cufflinks 6.327        
cufflinks 5.568        
cufflinks 0.241       Low
cufflinks 0.946       Low
cufflinks 1.273       Low
cufflinks 1.46        
cufflinks 5.541        
cufflinks 4.484        
cufflinks 6.138        
cufflinks 5.396        
cufflinks 2.298        
cufflinks 3.005        
cufflinks 2.028        
cufflinks 3.021        
cufflinks 2.313        

0 Strain