Gene : Bradi3g14400 B. distachyon v3.1
Defline:  (1 of 2) PTHR22807//PTHR22807:SF16 - NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING // S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE DOMAIN-CONTAINING PROTEIN Genomic Order:  1783
Name:  ? Bradi3g14400 Secondary Identifier:  ? PAC:32817398
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g14400 0.5kb upstream 0.5kb upstream 5417 true Bd3: 12811603-12817019 Brachypodium distachyon
Bradi3g14400 0.5kb upstream 0.5kb upstream 500 false Bd3: 12816520-12817019 Brachypodium distachyon
Bradi3g14400 0.5kb downstream 0.5kb downstream 5417 true Bd3: 12811103-12816519 Brachypodium distachyon
Bradi3g14400 0.5kb downstream 0.5kb downstream 500 false Bd3: 12811103-12811602 Brachypodium distachyon
Bradi3g14400 1.0kb upstream 1.0kb upstream 5917 true Bd3: 12811603-12817519 Brachypodium distachyon
Bradi3g14400 1.0kb upstream 1.0kb upstream 1000 false Bd3: 12816520-12817519 Brachypodium distachyon
Bradi3g14400 1.0kb downstream 1.0kb downstream 5917 true Bd3: 12810603-12816519 Brachypodium distachyon
Bradi3g14400 1.0kb downstream 1.0kb downstream 1000 false Bd3: 12810603-12811602 Brachypodium distachyon
Bradi3g14400 2.0kb upstream 2.0kb upstream 6917 true Bd3: 12811603-12818519 Brachypodium distachyon
Bradi3g14400 2.0kb upstream 2.0kb upstream 2000 false Bd3: 12816520-12818519 Brachypodium distachyon
Bradi3g14400 2.0kb downstream 2.0kb downstream 6917 true Bd3: 12809603-12816519 Brachypodium distachyon
Bradi3g14400 2.0kb downstream 2.0kb downstream 2000 false Bd3: 12809603-12811602 Brachypodium distachyon
Bradi3g14400 5.0kb upstream 5.0kb upstream 9917 true Bd3: 12811603-12821519 Brachypodium distachyon
Bradi3g14400 5.0kb upstream 5.0kb upstream 5000 false Bd3: 12816520-12821519 Brachypodium distachyon
Bradi3g14400 5.0kb downstream 5.0kb downstream 9917 true Bd3: 12806603-12816519 Brachypodium distachyon
Bradi3g14400 5.0kb downstream 5.0kb downstream 5000 false Bd3: 12806603-12811602 Brachypodium distachyon
Bradi3g14400 10.0kb upstream 10.0kb upstream 14917 true Bd3: 12811603-12826519 Brachypodium distachyon
Bradi3g14400 10.0kb upstream 10.0kb upstream 10000 false Bd3: 12816520-12826519 Brachypodium distachyon
Bradi3g14400 10.0kb downstream 10.0kb downstream 14917 true Bd3: 12801603-12816519 Brachypodium distachyon
Bradi3g14400 10.0kb downstream 10.0kb downstream 10000 false Bd3: 12801603-12811602 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579315 5269 Grass View MSA
122044592 5273 Angiosperm View MSA
121346334 5274 Embryophyte View MSA
123425870 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.147        
cufflinks 0.237        
cufflinks 0.277        
cufflinks 0.224        
cufflinks 0.108       Low
cufflinks 0.204        
cufflinks 0.209        
cufflinks 0.165        
cufflinks 0.234        
cufflinks 0.249        
cufflinks 0.174        
cufflinks 0.164        
cufflinks 0.135        
cufflinks 0.143        
cufflinks 0.131        
cufflinks 0.198        
cufflinks 0.155     Low  
cufflinks 0.293       High
cufflinks 0.175     Low  
cufflinks 0.043     Low Low
cufflinks 0.267        
cufflinks 0.205        
cufflinks 0.172        
cufflinks 0.176        
cufflinks 0.231        
cufflinks 0.306       High
cufflinks 0.171        
cufflinks 0.279        
cufflinks 0.239        
cufflinks 0.214        

0 Strain