Gene : Bradi3g11130 B. distachyon v3.1
Defline:  (1 of 1) 4.1.1.20 - Diaminopimelate decarboxylase / Meso-2,6-diaminoheptanedioate carboxy-lyase Genomic Order:  1456
Name:  ? Bradi3g11130 Secondary Identifier:  ? PAC:32818658
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5097 Brachypodium distachyon pathologic  
Bdistachyon PWY-724 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g11130 0.5kb upstream 0.5kb upstream 8093 true Bd3: 9559943-9568035 Brachypodium distachyon
Bradi3g11130 0.5kb upstream 0.5kb upstream 500 false Bd3: 9567536-9568035 Brachypodium distachyon
Bradi3g11130 0.5kb downstream 0.5kb downstream 8093 true Bd3: 9559443-9567535 Brachypodium distachyon
Bradi3g11130 0.5kb downstream 0.5kb downstream 500 false Bd3: 9559443-9559942 Brachypodium distachyon
Bradi3g11130 1.0kb upstream 1.0kb upstream 8593 true Bd3: 9559943-9568535 Brachypodium distachyon
Bradi3g11130 1.0kb upstream 1.0kb upstream 1000 false Bd3: 9567536-9568535 Brachypodium distachyon
Bradi3g11130 1.0kb downstream 1.0kb downstream 8593 true Bd3: 9558943-9567535 Brachypodium distachyon
Bradi3g11130 1.0kb downstream 1.0kb downstream 1000 false Bd3: 9558943-9559942 Brachypodium distachyon
Bradi3g11130 2.0kb upstream 2.0kb upstream 9593 true Bd3: 9559943-9569535 Brachypodium distachyon
Bradi3g11130 2.0kb upstream 2.0kb upstream 2000 false Bd3: 9567536-9569535 Brachypodium distachyon
Bradi3g11130 2.0kb downstream 2.0kb downstream 9593 true Bd3: 9557943-9567535 Brachypodium distachyon
Bradi3g11130 2.0kb downstream 2.0kb downstream 2000 false Bd3: 9557943-9559942 Brachypodium distachyon
Bradi3g11130 5.0kb upstream 5.0kb upstream 12593 true Bd3: 9559943-9572535 Brachypodium distachyon
Bradi3g11130 5.0kb upstream 5.0kb upstream 5000 false Bd3: 9567536-9572535 Brachypodium distachyon
Bradi3g11130 5.0kb downstream 5.0kb downstream 12593 true Bd3: 9554943-9567535 Brachypodium distachyon
Bradi3g11130 5.0kb downstream 5.0kb downstream 5000 false Bd3: 9554943-9559942 Brachypodium distachyon
Bradi3g11130 10.0kb upstream 10.0kb upstream 17593 true Bd3: 9559943-9577535 Brachypodium distachyon
Bradi3g11130 10.0kb upstream 10.0kb upstream 10000 false Bd3: 9567536-9577535 Brachypodium distachyon
Bradi3g11130 10.0kb downstream 10.0kb downstream 17593 true Bd3: 9549943-9567535 Brachypodium distachyon
Bradi3g11130 10.0kb downstream 10.0kb downstream 10000 false Bd3: 9549943-9559942 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571113 5269 Grass View MSA
122048449 5273 Angiosperm View MSA
121349416 5274 Embryophyte View MSA
123428095 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.588        
cufflinks 16.092     High High
cufflinks 14.674     High  
cufflinks 16.885     High High
cufflinks 7.897       Low
cufflinks 12.729     High  
cufflinks 14.005     High  
cufflinks 9.774     High  
cufflinks 11.836     High  
cufflinks 8.621        
cufflinks 11.49     High  
cufflinks 9.48     High  
cufflinks 6.486       Low
cufflinks 9.5     High  
cufflinks 5.519       Low
cufflinks 11.967     High  
cufflinks 12.915     High  
cufflinks 20.386     High High
cufflinks 12.398        
cufflinks 7.674       Low
cufflinks 11.079        
cufflinks 10.073     High  
cufflinks 9.118        
cufflinks 10.434     High  
cufflinks 13.841     High  
cufflinks 13.427     High  
cufflinks 8.101        
cufflinks 11.472     High  
cufflinks 10.593        
cufflinks 11.674     High  

0 Strain