Gene : Bradi3g11960 B. distachyon v3.1
Defline:  (1 of 56) PF02902 - Ulp1 protease family, C-terminal catalytic domain Genomic Order:  1524
Name:  ? Bradi3g11960 Secondary Identifier:  ? PAC:32820224
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g11960 0.5kb upstream 0.5kb upstream 7143 true Bd3: 10481030-10488172 Brachypodium distachyon
Bradi3g11960 0.5kb upstream 0.5kb upstream 500 false Bd3: 10487673-10488172 Brachypodium distachyon
Bradi3g11960 0.5kb downstream 0.5kb downstream 7143 true Bd3: 10480530-10487672 Brachypodium distachyon
Bradi3g11960 0.5kb downstream 0.5kb downstream 500 false Bd3: 10480530-10481029 Brachypodium distachyon
Bradi3g11960 1.0kb upstream 1.0kb upstream 7643 true Bd3: 10481030-10488672 Brachypodium distachyon
Bradi3g11960 1.0kb upstream 1.0kb upstream 1000 false Bd3: 10487673-10488672 Brachypodium distachyon
Bradi3g11960 1.0kb downstream 1.0kb downstream 7643 true Bd3: 10480030-10487672 Brachypodium distachyon
Bradi3g11960 1.0kb downstream 1.0kb downstream 1000 false Bd3: 10480030-10481029 Brachypodium distachyon
Bradi3g11960 2.0kb upstream 2.0kb upstream 8643 true Bd3: 10481030-10489672 Brachypodium distachyon
Bradi3g11960 2.0kb upstream 2.0kb upstream 2000 false Bd3: 10487673-10489672 Brachypodium distachyon
Bradi3g11960 2.0kb downstream 2.0kb downstream 8643 true Bd3: 10479030-10487672 Brachypodium distachyon
Bradi3g11960 2.0kb downstream 2.0kb downstream 2000 false Bd3: 10479030-10481029 Brachypodium distachyon
Bradi3g11960 5.0kb upstream 5.0kb upstream 11643 true Bd3: 10481030-10492672 Brachypodium distachyon
Bradi3g11960 5.0kb upstream 5.0kb upstream 5000 false Bd3: 10487673-10492672 Brachypodium distachyon
Bradi3g11960 5.0kb downstream 5.0kb downstream 11643 true Bd3: 10476030-10487672 Brachypodium distachyon
Bradi3g11960 5.0kb downstream 5.0kb downstream 5000 false Bd3: 10476030-10481029 Brachypodium distachyon
Bradi3g11960 10.0kb upstream 10.0kb upstream 16643 true Bd3: 10481030-10497672 Brachypodium distachyon
Bradi3g11960 10.0kb upstream 10.0kb upstream 10000 false Bd3: 10487673-10497672 Brachypodium distachyon
Bradi3g11960 10.0kb downstream 10.0kb downstream 16643 true Bd3: 10471030-10487672 Brachypodium distachyon
Bradi3g11960 10.0kb downstream 10.0kb downstream 10000 false Bd3: 10471030-10481029 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124590402 5269 Grass View MSA
122048825 5273 Angiosperm View MSA
121351710 5274 Embryophyte View MSA
123427809 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.642        
cufflinks 5.651        
cufflinks 7.726        
cufflinks 4.967        
cufflinks 2.036       Low
cufflinks 5.668        
cufflinks 5.23        
cufflinks 6.839        
cufflinks 6.009        
cufflinks 6.244        
cufflinks 9.995     High High
cufflinks 4.809        
cufflinks 6.096        
cufflinks 6.944        
cufflinks 4.673        
cufflinks 5.47        
cufflinks 3.375        
cufflinks 1.818       Low
cufflinks 1.854       Low
cufflinks 0.403       Low
cufflinks 2.169        
cufflinks 8.361       High
cufflinks 6.097        
cufflinks 4.926        
cufflinks 4.728        
cufflinks 6.942        
cufflinks 7.709        
cufflinks 8.151       High
cufflinks 8.177       High
cufflinks 2.41        

0 Strain