Gene : Bradi3g16040 B. distachyon v3.1
Defline:  (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA Genomic Order:  2017
Name:  ? Bradi3g16040 Secondary Identifier:  ? PAC:32817432
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g16040 0.5kb upstream 0.5kb upstream 4091 true Bd3: 14244533-14248623 Brachypodium distachyon
Bradi3g16040 0.5kb upstream 0.5kb upstream 500 false Bd3: 14244533-14245032 Brachypodium distachyon
Bradi3g16040 0.5kb downstream 0.5kb downstream 4091 true Bd3: 14245033-14249123 Brachypodium distachyon
Bradi3g16040 0.5kb downstream 0.5kb downstream 500 false Bd3: 14248624-14249123 Brachypodium distachyon
Bradi3g16040 1.0kb upstream 1.0kb upstream 4591 true Bd3: 14244033-14248623 Brachypodium distachyon
Bradi3g16040 1.0kb upstream 1.0kb upstream 1000 false Bd3: 14244033-14245032 Brachypodium distachyon
Bradi3g16040 1.0kb downstream 1.0kb downstream 4591 true Bd3: 14245033-14249623 Brachypodium distachyon
Bradi3g16040 1.0kb downstream 1.0kb downstream 1000 false Bd3: 14248624-14249623 Brachypodium distachyon
Bradi3g16040 2.0kb upstream 2.0kb upstream 5591 true Bd3: 14243033-14248623 Brachypodium distachyon
Bradi3g16040 2.0kb upstream 2.0kb upstream 2000 false Bd3: 14243033-14245032 Brachypodium distachyon
Bradi3g16040 2.0kb downstream 2.0kb downstream 5591 true Bd3: 14245033-14250623 Brachypodium distachyon
Bradi3g16040 2.0kb downstream 2.0kb downstream 2000 false Bd3: 14248624-14250623 Brachypodium distachyon
Bradi3g16040 5.0kb upstream 5.0kb upstream 8591 true Bd3: 14240033-14248623 Brachypodium distachyon
Bradi3g16040 5.0kb upstream 5.0kb upstream 5000 false Bd3: 14240033-14245032 Brachypodium distachyon
Bradi3g16040 5.0kb downstream 5.0kb downstream 8591 true Bd3: 14245033-14253623 Brachypodium distachyon
Bradi3g16040 5.0kb downstream 5.0kb downstream 5000 false Bd3: 14248624-14253623 Brachypodium distachyon
Bradi3g16040 10.0kb upstream 10.0kb upstream 13591 true Bd3: 14235033-14248623 Brachypodium distachyon
Bradi3g16040 10.0kb upstream 10.0kb upstream 10000 false Bd3: 14235033-14245032 Brachypodium distachyon
Bradi3g16040 10.0kb downstream 10.0kb downstream 13591 true Bd3: 14245033-14258623 Brachypodium distachyon
Bradi3g16040 10.0kb downstream 10.0kb downstream 10000 false Bd3: 14248624-14258623 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578824 5269 Grass View MSA
122043866 5273 Angiosperm View MSA
121344219 5274 Embryophyte View MSA
123380005 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.118     High  
cufflinks 28.209     High  
cufflinks 23.53     High  
cufflinks 22.977     High  
cufflinks 20.686     High  
cufflinks 35.409     High  
cufflinks 33.105     High  
cufflinks 28.854     High  
cufflinks 38.05     High  
cufflinks 27.752     High  
cufflinks 61.66     High High
cufflinks 34.65     High  
cufflinks 55.736     High  
cufflinks 60.453     High High
cufflinks 25.124     High  
cufflinks 37.51     High  
cufflinks 28.809     High  
cufflinks 0.511       Low
cufflinks 22.387     High  
cufflinks 21.052     High  
cufflinks 13.925     High  
cufflinks 29.2     High  
cufflinks 28.13     High  
cufflinks 38.437     High  
cufflinks 35.42     High  
cufflinks 22.245     High  
cufflinks 65.517     High High
cufflinks 22.936     High  
cufflinks 24.939     High  
cufflinks 9.198        

0 Strain