Gene : Bradi3g16227 B. distachyon v3.1
Defline:  (1 of 9) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2045
Name:  ? Bradi3g16227 Secondary Identifier:  ? PAC:32813383
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g16227 0.5kb upstream 0.5kb upstream 3820 true Bd3: 14404201-14408020 Brachypodium distachyon
Bradi3g16227 0.5kb upstream 0.5kb upstream 500 false Bd3: 14407521-14408020 Brachypodium distachyon
Bradi3g16227 0.5kb downstream 0.5kb downstream 3820 true Bd3: 14403701-14407520 Brachypodium distachyon
Bradi3g16227 0.5kb downstream 0.5kb downstream 500 false Bd3: 14403701-14404200 Brachypodium distachyon
Bradi3g16227 1.0kb upstream 1.0kb upstream 4320 true Bd3: 14404201-14408520 Brachypodium distachyon
Bradi3g16227 1.0kb upstream 1.0kb upstream 1000 false Bd3: 14407521-14408520 Brachypodium distachyon
Bradi3g16227 1.0kb downstream 1.0kb downstream 4320 true Bd3: 14403201-14407520 Brachypodium distachyon
Bradi3g16227 1.0kb downstream 1.0kb downstream 1000 false Bd3: 14403201-14404200 Brachypodium distachyon
Bradi3g16227 2.0kb upstream 2.0kb upstream 5320 true Bd3: 14404201-14409520 Brachypodium distachyon
Bradi3g16227 2.0kb upstream 2.0kb upstream 2000 false Bd3: 14407521-14409520 Brachypodium distachyon
Bradi3g16227 2.0kb downstream 2.0kb downstream 5320 true Bd3: 14402201-14407520 Brachypodium distachyon
Bradi3g16227 2.0kb downstream 2.0kb downstream 2000 false Bd3: 14402201-14404200 Brachypodium distachyon
Bradi3g16227 5.0kb upstream 5.0kb upstream 8320 true Bd3: 14404201-14412520 Brachypodium distachyon
Bradi3g16227 5.0kb upstream 5.0kb upstream 5000 false Bd3: 14407521-14412520 Brachypodium distachyon
Bradi3g16227 5.0kb downstream 5.0kb downstream 8320 true Bd3: 14399201-14407520 Brachypodium distachyon
Bradi3g16227 5.0kb downstream 5.0kb downstream 5000 false Bd3: 14399201-14404200 Brachypodium distachyon
Bradi3g16227 10.0kb upstream 10.0kb upstream 13320 true Bd3: 14404201-14417520 Brachypodium distachyon
Bradi3g16227 10.0kb upstream 10.0kb upstream 10000 false Bd3: 14407521-14417520 Brachypodium distachyon
Bradi3g16227 10.0kb downstream 10.0kb downstream 13320 true Bd3: 14394201-14407520 Brachypodium distachyon
Bradi3g16227 10.0kb downstream 10.0kb downstream 10000 false Bd3: 14394201-14404200 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577678 5269 Grass View MSA
122046804 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.375        
cufflinks 1.566       High
cufflinks 0.918        
cufflinks 1.586       High
cufflinks 0.254       Low
cufflinks 0.869        
cufflinks 1.077        
cufflinks 0.51        
cufflinks 0.73        
cufflinks 0.671        
cufflinks 0.598        
cufflinks 0.514        
cufflinks 0.593        
cufflinks 0.442        
cufflinks 0.312       Low
cufflinks 0.766        
cufflinks 0.796        
cufflinks 1.002        
cufflinks 1.08        
cufflinks 0.314       Low
cufflinks 0.715        
cufflinks 0.637        
cufflinks 0.533        
cufflinks 0.681        
cufflinks 0.903        
cufflinks 0.905        
cufflinks 0.411        
cufflinks 0.673        
cufflinks 0.865        
cufflinks 1.003        

0 Strain