Gene : Bradi3g26660 B. distachyon v3.1
Defline:  (1 of 2) PTHR10869//PTHR10869:SF55 - PROLYL 4-HYDROXYLASE ALPHA SUBUNIT // OXOGLUTARATE/IRON-DEPENDENT OXYGENASE Genomic Order:  3131
Name:  ? Bradi3g26660 Secondary Identifier:  ? PAC:32815230
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g26660 0.5kb upstream 0.5kb upstream 5603 true Bd3: 27081893-27087495 Brachypodium distachyon
Bradi3g26660 0.5kb upstream 0.5kb upstream 500 false Bd3: 27086996-27087495 Brachypodium distachyon
Bradi3g26660 0.5kb downstream 0.5kb downstream 5603 true Bd3: 27081393-27086995 Brachypodium distachyon
Bradi3g26660 0.5kb downstream 0.5kb downstream 500 false Bd3: 27081393-27081892 Brachypodium distachyon
Bradi3g26660 1.0kb upstream 1.0kb upstream 6103 true Bd3: 27081893-27087995 Brachypodium distachyon
Bradi3g26660 1.0kb upstream 1.0kb upstream 1000 false Bd3: 27086996-27087995 Brachypodium distachyon
Bradi3g26660 1.0kb downstream 1.0kb downstream 6103 true Bd3: 27080893-27086995 Brachypodium distachyon
Bradi3g26660 1.0kb downstream 1.0kb downstream 1000 false Bd3: 27080893-27081892 Brachypodium distachyon
Bradi3g26660 2.0kb upstream 2.0kb upstream 7103 true Bd3: 27081893-27088995 Brachypodium distachyon
Bradi3g26660 2.0kb upstream 2.0kb upstream 2000 false Bd3: 27086996-27088995 Brachypodium distachyon
Bradi3g26660 2.0kb downstream 2.0kb downstream 7103 true Bd3: 27079893-27086995 Brachypodium distachyon
Bradi3g26660 2.0kb downstream 2.0kb downstream 2000 false Bd3: 27079893-27081892 Brachypodium distachyon
Bradi3g26660 5.0kb upstream 5.0kb upstream 10103 true Bd3: 27081893-27091995 Brachypodium distachyon
Bradi3g26660 5.0kb upstream 5.0kb upstream 5000 false Bd3: 27086996-27091995 Brachypodium distachyon
Bradi3g26660 5.0kb downstream 5.0kb downstream 10103 true Bd3: 27076893-27086995 Brachypodium distachyon
Bradi3g26660 5.0kb downstream 5.0kb downstream 5000 false Bd3: 27076893-27081892 Brachypodium distachyon
Bradi3g26660 10.0kb upstream 10.0kb upstream 15103 true Bd3: 27081893-27096995 Brachypodium distachyon
Bradi3g26660 10.0kb upstream 10.0kb upstream 10000 false Bd3: 27086996-27096995 Brachypodium distachyon
Bradi3g26660 10.0kb downstream 10.0kb downstream 15103 true Bd3: 27071893-27086995 Brachypodium distachyon
Bradi3g26660 10.0kb downstream 10.0kb downstream 10000 false Bd3: 27071893-27081892 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588695 5269 Grass View MSA
122045302 5273 Angiosperm View MSA
121349816 5274 Embryophyte View MSA
123428732 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.261        
cufflinks 7.367        
cufflinks 9.027        
cufflinks 8.497        
cufflinks 9.679     High  
cufflinks 6.853       Low
cufflinks 7.322        
cufflinks 8.557        
cufflinks 8.177        
cufflinks 10.319        
cufflinks 7.77        
cufflinks 6.64       Low
cufflinks 6.15       Low
cufflinks 7.768     High  
cufflinks 10.914     High  
cufflinks 7.107       Low
cufflinks 11.74     High  
cufflinks 10.446        
cufflinks 8.5        
cufflinks 13.761     High High
cufflinks 17.119     High High
cufflinks 7.717        
cufflinks 8.601        
cufflinks 7.795        
cufflinks 8.204        
cufflinks 9.748        
cufflinks 7.951        
cufflinks 11.16     High  
cufflinks 10.001        
cufflinks 10.095        

0 Strain