Gene : Bradi3g20880 B. distachyon v3.1
Defline:  (1 of 2) PTHR10091//PTHR10091:SF8 - ALDOSE-1-EPIMERASE // SUBFAMILY NOT NAMED Genomic Order:  2677
Name:  ? Bradi3g20880 Secondary Identifier:  ? PAC:32818605
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY66-422 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g20880 0.5kb upstream 0.5kb upstream 4656 true Bd3: 19907385-19912040 Brachypodium distachyon
Bradi3g20880 0.5kb upstream 0.5kb upstream 500 false Bd3: 19907385-19907884 Brachypodium distachyon
Bradi3g20880 0.5kb downstream 0.5kb downstream 4656 true Bd3: 19907885-19912540 Brachypodium distachyon
Bradi3g20880 0.5kb downstream 0.5kb downstream 500 false Bd3: 19912041-19912540 Brachypodium distachyon
Bradi3g20880 1.0kb upstream 1.0kb upstream 5156 true Bd3: 19906885-19912040 Brachypodium distachyon
Bradi3g20880 1.0kb upstream 1.0kb upstream 1000 false Bd3: 19906885-19907884 Brachypodium distachyon
Bradi3g20880 1.0kb downstream 1.0kb downstream 5156 true Bd3: 19907885-19913040 Brachypodium distachyon
Bradi3g20880 1.0kb downstream 1.0kb downstream 1000 false Bd3: 19912041-19913040 Brachypodium distachyon
Bradi3g20880 2.0kb upstream 2.0kb upstream 6156 true Bd3: 19905885-19912040 Brachypodium distachyon
Bradi3g20880 2.0kb upstream 2.0kb upstream 2000 false Bd3: 19905885-19907884 Brachypodium distachyon
Bradi3g20880 2.0kb downstream 2.0kb downstream 6156 true Bd3: 19907885-19914040 Brachypodium distachyon
Bradi3g20880 2.0kb downstream 2.0kb downstream 2000 false Bd3: 19912041-19914040 Brachypodium distachyon
Bradi3g20880 5.0kb upstream 5.0kb upstream 9156 true Bd3: 19902885-19912040 Brachypodium distachyon
Bradi3g20880 5.0kb upstream 5.0kb upstream 5000 false Bd3: 19902885-19907884 Brachypodium distachyon
Bradi3g20880 5.0kb downstream 5.0kb downstream 9156 true Bd3: 19907885-19917040 Brachypodium distachyon
Bradi3g20880 5.0kb downstream 5.0kb downstream 5000 false Bd3: 19912041-19917040 Brachypodium distachyon
Bradi3g20880 10.0kb upstream 10.0kb upstream 14156 true Bd3: 19897885-19912040 Brachypodium distachyon
Bradi3g20880 10.0kb upstream 10.0kb upstream 10000 false Bd3: 19897885-19907884 Brachypodium distachyon
Bradi3g20880 10.0kb downstream 10.0kb downstream 14156 true Bd3: 19907885-19922040 Brachypodium distachyon
Bradi3g20880 10.0kb downstream 10.0kb downstream 10000 false Bd3: 19912041-19922040 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580476 5269 Grass View MSA
122043649 5273 Angiosperm View MSA
121346493 5274 Embryophyte View MSA
123425845 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.582        
cufflinks 9.571        
cufflinks 9.091        
cufflinks 7.855        
cufflinks 5.6        
cufflinks 6.035        
cufflinks 7.298        
cufflinks 4.64        
cufflinks 5.111        
cufflinks 5.715        
cufflinks 2.019       Low
cufflinks 6.618        
cufflinks 1.435       Low
cufflinks 1.742       Low
cufflinks 3.631        
cufflinks 6.863        
cufflinks 7.427        
cufflinks 8.553        
cufflinks 8.866        
cufflinks 4.026        
cufflinks 9.654        
cufflinks 7.541        
cufflinks 4.767        
cufflinks 5.492        
cufflinks 5.612        
cufflinks 8.607        
cufflinks 1.266       Low
cufflinks 8.08        
cufflinks 8.134        
cufflinks 13.632     High High

0 Strain