Gene : Bradi3g22370 B. distachyon v3.1
Defline:  (1 of 1) PTHR10625//PTHR10625:SF109 - HISTONE DEACETYLASE // HISTONE DEACETYLASE 2 Genomic Order:  2851
Name:  ? Bradi3g22370 Secondary Identifier:  ? PAC:32817712
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g22370 0.5kb upstream 0.5kb upstream 5335 true Bd3: 21469812-21475146 Brachypodium distachyon
Bradi3g22370 0.5kb upstream 0.5kb upstream 500 false Bd3: 21474647-21475146 Brachypodium distachyon
Bradi3g22370 0.5kb downstream 0.5kb downstream 5335 true Bd3: 21469312-21474646 Brachypodium distachyon
Bradi3g22370 0.5kb downstream 0.5kb downstream 500 false Bd3: 21469312-21469811 Brachypodium distachyon
Bradi3g22370 1.0kb upstream 1.0kb upstream 5835 true Bd3: 21469812-21475646 Brachypodium distachyon
Bradi3g22370 1.0kb upstream 1.0kb upstream 1000 false Bd3: 21474647-21475646 Brachypodium distachyon
Bradi3g22370 1.0kb downstream 1.0kb downstream 5835 true Bd3: 21468812-21474646 Brachypodium distachyon
Bradi3g22370 1.0kb downstream 1.0kb downstream 1000 false Bd3: 21468812-21469811 Brachypodium distachyon
Bradi3g22370 2.0kb upstream 2.0kb upstream 6835 true Bd3: 21469812-21476646 Brachypodium distachyon
Bradi3g22370 2.0kb upstream 2.0kb upstream 2000 false Bd3: 21474647-21476646 Brachypodium distachyon
Bradi3g22370 2.0kb downstream 2.0kb downstream 6835 true Bd3: 21467812-21474646 Brachypodium distachyon
Bradi3g22370 2.0kb downstream 2.0kb downstream 2000 false Bd3: 21467812-21469811 Brachypodium distachyon
Bradi3g22370 5.0kb upstream 5.0kb upstream 9835 true Bd3: 21469812-21479646 Brachypodium distachyon
Bradi3g22370 5.0kb upstream 5.0kb upstream 5000 false Bd3: 21474647-21479646 Brachypodium distachyon
Bradi3g22370 5.0kb downstream 5.0kb downstream 9835 true Bd3: 21464812-21474646 Brachypodium distachyon
Bradi3g22370 5.0kb downstream 5.0kb downstream 5000 false Bd3: 21464812-21469811 Brachypodium distachyon
Bradi3g22370 10.0kb upstream 10.0kb upstream 14835 true Bd3: 21469812-21484646 Brachypodium distachyon
Bradi3g22370 10.0kb upstream 10.0kb upstream 10000 false Bd3: 21474647-21484646 Brachypodium distachyon
Bradi3g22370 10.0kb downstream 10.0kb downstream 14835 true Bd3: 21459812-21474646 Brachypodium distachyon
Bradi3g22370 10.0kb downstream 10.0kb downstream 10000 false Bd3: 21459812-21469811 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573980 5269 Grass View MSA
122043471 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.764       High
cufflinks 3.605       High
cufflinks 2.882        
cufflinks 2.987        
cufflinks 1.569       Low
cufflinks 2.916        
cufflinks 3.334        
cufflinks 2.354        
cufflinks 2.422        
cufflinks 1.736       Low
cufflinks 2.045        
cufflinks 2.323        
cufflinks 1.697       Low
cufflinks 1.861        
cufflinks 2.529        
cufflinks 3.124        
cufflinks 2.47        
cufflinks 5.029       High
cufflinks 2.991        
cufflinks 0.833       Low
cufflinks 2.513        
cufflinks 2.139        
cufflinks 2.373        
cufflinks 2.457        
cufflinks 2.648        
cufflinks 2.214        
cufflinks 2.189        
cufflinks 2.311        
cufflinks 2.204        
cufflinks 2.751        

0 Strain