Gene : Bradi3g29417 B. distachyon v3.1
Defline:  (1 of 1) PTHR14190//PTHR14190:SF11 - SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52 Genomic Order:  3543
Name:  ? Bradi3g29417 Secondary Identifier:  ? PAC:32820074
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g29417 0.5kb upstream 0.5kb upstream 24585 true Bd3: 31195033-31219617 Brachypodium distachyon
Bradi3g29417 0.5kb upstream 0.5kb upstream 500 false Bd3: 31195033-31195532 Brachypodium distachyon
Bradi3g29417 0.5kb downstream 0.5kb downstream 24585 true Bd3: 31195533-31220117 Brachypodium distachyon
Bradi3g29417 0.5kb downstream 0.5kb downstream 500 false Bd3: 31219618-31220117 Brachypodium distachyon
Bradi3g29417 1.0kb upstream 1.0kb upstream 25085 true Bd3: 31194533-31219617 Brachypodium distachyon
Bradi3g29417 1.0kb upstream 1.0kb upstream 1000 false Bd3: 31194533-31195532 Brachypodium distachyon
Bradi3g29417 1.0kb downstream 1.0kb downstream 25085 true Bd3: 31195533-31220617 Brachypodium distachyon
Bradi3g29417 1.0kb downstream 1.0kb downstream 1000 false Bd3: 31219618-31220617 Brachypodium distachyon
Bradi3g29417 2.0kb upstream 2.0kb upstream 26085 true Bd3: 31193533-31219617 Brachypodium distachyon
Bradi3g29417 2.0kb upstream 2.0kb upstream 2000 false Bd3: 31193533-31195532 Brachypodium distachyon
Bradi3g29417 2.0kb downstream 2.0kb downstream 26085 true Bd3: 31195533-31221617 Brachypodium distachyon
Bradi3g29417 2.0kb downstream 2.0kb downstream 2000 false Bd3: 31219618-31221617 Brachypodium distachyon
Bradi3g29417 5.0kb upstream 5.0kb upstream 29085 true Bd3: 31190533-31219617 Brachypodium distachyon
Bradi3g29417 5.0kb upstream 5.0kb upstream 5000 false Bd3: 31190533-31195532 Brachypodium distachyon
Bradi3g29417 5.0kb downstream 5.0kb downstream 29085 true Bd3: 31195533-31224617 Brachypodium distachyon
Bradi3g29417 5.0kb downstream 5.0kb downstream 5000 false Bd3: 31219618-31224617 Brachypodium distachyon
Bradi3g29417 10.0kb upstream 10.0kb upstream 34085 true Bd3: 31185533-31219617 Brachypodium distachyon
Bradi3g29417 10.0kb upstream 10.0kb upstream 10000 false Bd3: 31185533-31195532 Brachypodium distachyon
Bradi3g29417 10.0kb downstream 10.0kb downstream 34085 true Bd3: 31195533-31229617 Brachypodium distachyon
Bradi3g29417 10.0kb downstream 10.0kb downstream 10000 false Bd3: 31219618-31229617 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569026 5269 Grass View MSA
122043794 5273 Angiosperm View MSA
121345189 5274 Embryophyte View MSA
123425999 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.104        
cufflinks 0.201        
cufflinks 0.303       High
cufflinks 0.172        
cufflinks 0.045     Low Low
cufflinks 0.189        
cufflinks 0.189        
cufflinks 0.168        
cufflinks 0.193        
cufflinks 0.243        
cufflinks 0.323       High
cufflinks 0.193        
cufflinks 0.237        
cufflinks 0.251        
cufflinks 0.105        
cufflinks 0.209        
cufflinks 0.071     Low Low
cufflinks 0.121     Low  
cufflinks 0.094     Low  
cufflinks 0.031     Low Low
cufflinks 0.079     Low Low
cufflinks 0.363       High
cufflinks 0.186        
cufflinks 0.181        
cufflinks 0.164        
cufflinks 0.339       High
cufflinks 0.301       High
cufflinks 0.368       High
cufflinks 0.348       High
cufflinks 0.121     Low  

0 Strain