Gene : Bradi3g34524 B. distachyon v3.1
Defline:  (1 of 1) PTHR10739//PTHR10739:SF30 - CYTIDYLYLTRANSFERASE Genomic Order:  4201
Name:  ? Bradi3g34524 Secondary Identifier:  ? PAC:32819006
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-3561 Brachypodium distachyon pathologic  
Bdistachyon PWY3O-450 Brachypodium distachyon pathologic  
Bdistachyon PWY4FS-2 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g34524 0.5kb upstream 0.5kb upstream 3013 true Bd3: 36641680-36644692 Brachypodium distachyon
Bradi3g34524 0.5kb upstream 0.5kb upstream 500 false Bd3: 36644193-36644692 Brachypodium distachyon
Bradi3g34524 0.5kb downstream 0.5kb downstream 3013 true Bd3: 36641180-36644192 Brachypodium distachyon
Bradi3g34524 0.5kb downstream 0.5kb downstream 500 false Bd3: 36641180-36641679 Brachypodium distachyon
Bradi3g34524 1.0kb upstream 1.0kb upstream 3513 true Bd3: 36641680-36645192 Brachypodium distachyon
Bradi3g34524 1.0kb upstream 1.0kb upstream 1000 false Bd3: 36644193-36645192 Brachypodium distachyon
Bradi3g34524 1.0kb downstream 1.0kb downstream 3513 true Bd3: 36640680-36644192 Brachypodium distachyon
Bradi3g34524 1.0kb downstream 1.0kb downstream 1000 false Bd3: 36640680-36641679 Brachypodium distachyon
Bradi3g34524 2.0kb upstream 2.0kb upstream 4513 true Bd3: 36641680-36646192 Brachypodium distachyon
Bradi3g34524 2.0kb upstream 2.0kb upstream 2000 false Bd3: 36644193-36646192 Brachypodium distachyon
Bradi3g34524 2.0kb downstream 2.0kb downstream 4513 true Bd3: 36639680-36644192 Brachypodium distachyon
Bradi3g34524 2.0kb downstream 2.0kb downstream 2000 false Bd3: 36639680-36641679 Brachypodium distachyon
Bradi3g34524 5.0kb upstream 5.0kb upstream 7513 true Bd3: 36641680-36649192 Brachypodium distachyon
Bradi3g34524 5.0kb upstream 5.0kb upstream 5000 false Bd3: 36644193-36649192 Brachypodium distachyon
Bradi3g34524 5.0kb downstream 5.0kb downstream 7513 true Bd3: 36636680-36644192 Brachypodium distachyon
Bradi3g34524 5.0kb downstream 5.0kb downstream 5000 false Bd3: 36636680-36641679 Brachypodium distachyon
Bradi3g34524 10.0kb upstream 10.0kb upstream 12513 true Bd3: 36641680-36654192 Brachypodium distachyon
Bradi3g34524 10.0kb upstream 10.0kb upstream 10000 false Bd3: 36644193-36654192 Brachypodium distachyon
Bradi3g34524 10.0kb downstream 10.0kb downstream 12513 true Bd3: 36631680-36644192 Brachypodium distachyon
Bradi3g34524 10.0kb downstream 10.0kb downstream 10000 false Bd3: 36631680-36641679 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124582845 5269 Grass View MSA
122047197 5273 Angiosperm View MSA
121348751 5274 Embryophyte View MSA
123428717 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.428     High  
cufflinks 11.706     High  
cufflinks 12.082     High  
cufflinks 15.103     High  
cufflinks 14.824     High  
cufflinks 9.845     High  
cufflinks 9.042        
cufflinks 12.624     High  
cufflinks 10.352     High  
cufflinks 13.459     High  
cufflinks 6.452       Low
cufflinks 12.65     High  
cufflinks 5.572       Low
cufflinks 5.527       Low
cufflinks 20.616     High High
cufflinks 10.152     High  
cufflinks 15.366     High  
cufflinks 16.359     High  
cufflinks 20.095     High High
cufflinks 14.119     High  
cufflinks 26.525     High High
cufflinks 11.097     High  
cufflinks 11.485     High  
cufflinks 11.035     High  
cufflinks 12.224     High  
cufflinks 12.716     High  
cufflinks 6.945       Low
cufflinks 13.59     High  
cufflinks 12.846     High  
cufflinks 20.447     High High

0 Strain