Gene : Bradi3g32880 B. distachyon v3.1
Defline:  (1 of 1) PTHR13914 - PROLINE OXIDASE Genomic Order:  3980
Name:  ? Bradi3g32880 Secondary Identifier:  ? PAC:32822865
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CITRULBIO-PWY Brachypodium distachyon pathologic  
Bdistachyon PROUT-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-6922 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g32880 0.5kb upstream 0.5kb upstream 3920 true Bd3: 35021058-35024977 Brachypodium distachyon
Bradi3g32880 0.5kb upstream 0.5kb upstream 500 false Bd3: 35021058-35021557 Brachypodium distachyon
Bradi3g32880 0.5kb downstream 0.5kb downstream 3920 true Bd3: 35021558-35025477 Brachypodium distachyon
Bradi3g32880 0.5kb downstream 0.5kb downstream 500 false Bd3: 35024978-35025477 Brachypodium distachyon
Bradi3g32880 1.0kb upstream 1.0kb upstream 4420 true Bd3: 35020558-35024977 Brachypodium distachyon
Bradi3g32880 1.0kb upstream 1.0kb upstream 1000 false Bd3: 35020558-35021557 Brachypodium distachyon
Bradi3g32880 1.0kb downstream 1.0kb downstream 4420 true Bd3: 35021558-35025977 Brachypodium distachyon
Bradi3g32880 1.0kb downstream 1.0kb downstream 1000 false Bd3: 35024978-35025977 Brachypodium distachyon
Bradi3g32880 2.0kb upstream 2.0kb upstream 5420 true Bd3: 35019558-35024977 Brachypodium distachyon
Bradi3g32880 2.0kb upstream 2.0kb upstream 2000 false Bd3: 35019558-35021557 Brachypodium distachyon
Bradi3g32880 2.0kb downstream 2.0kb downstream 5420 true Bd3: 35021558-35026977 Brachypodium distachyon
Bradi3g32880 2.0kb downstream 2.0kb downstream 2000 false Bd3: 35024978-35026977 Brachypodium distachyon
Bradi3g32880 5.0kb upstream 5.0kb upstream 8420 true Bd3: 35016558-35024977 Brachypodium distachyon
Bradi3g32880 5.0kb upstream 5.0kb upstream 5000 false Bd3: 35016558-35021557 Brachypodium distachyon
Bradi3g32880 5.0kb downstream 5.0kb downstream 8420 true Bd3: 35021558-35029977 Brachypodium distachyon
Bradi3g32880 5.0kb downstream 5.0kb downstream 5000 false Bd3: 35024978-35029977 Brachypodium distachyon
Bradi3g32880 10.0kb upstream 10.0kb upstream 13420 true Bd3: 35011558-35024977 Brachypodium distachyon
Bradi3g32880 10.0kb upstream 10.0kb upstream 10000 false Bd3: 35011558-35021557 Brachypodium distachyon
Bradi3g32880 10.0kb downstream 10.0kb downstream 13420 true Bd3: 35021558-35034977 Brachypodium distachyon
Bradi3g32880 10.0kb downstream 10.0kb downstream 10000 false Bd3: 35024978-35034977 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573895 5269 Grass View MSA
122047709 5273 Angiosperm View MSA
121345691 5274 Embryophyte View MSA
123427745 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.107        
cufflinks 1.72       Low
cufflinks 8.519        
cufflinks 3.151        
cufflinks 40.732     High High
cufflinks 1.613       Low
cufflinks 1.399       Low
cufflinks 4.34        
cufflinks 1.558       Low
cufflinks 27.939     High High
cufflinks 5.353        
cufflinks 3.647        
cufflinks 2.313        
cufflinks 1.852        
cufflinks 6.796        
cufflinks 2.343        
cufflinks 3.173        
cufflinks 3.741        
cufflinks 10.632        
cufflinks 54.064     High High
cufflinks 1.797        
cufflinks 13.685     High  
cufflinks 3.793        
cufflinks 1.993        
cufflinks 1.536       Low
cufflinks 16.968     High High
cufflinks 5.482        
cufflinks 22.737     High High
cufflinks 18.133     High High
cufflinks 9.714        

0 Strain