Gene : Bradi3g39540 B. distachyon v3.1
Defline:  (1 of 2) PTHR13832//PTHR13832:SF286 - PROTEIN PHOSPHATASE 2C // PROTEIN PHOSPHATASE 2C 33-RELATED Genomic Order:  4862
Name:  ? Bradi3g39540 Secondary Identifier:  ? PAC:32814295
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g39540 0.5kb upstream 0.5kb upstream 6108 true Bd3: 41538373-41544480 Brachypodium distachyon
Bradi3g39540 0.5kb upstream 0.5kb upstream 500 false Bd3: 41543981-41544480 Brachypodium distachyon
Bradi3g39540 0.5kb downstream 0.5kb downstream 6108 true Bd3: 41537873-41543980 Brachypodium distachyon
Bradi3g39540 0.5kb downstream 0.5kb downstream 500 false Bd3: 41537873-41538372 Brachypodium distachyon
Bradi3g39540 1.0kb upstream 1.0kb upstream 6608 true Bd3: 41538373-41544980 Brachypodium distachyon
Bradi3g39540 1.0kb upstream 1.0kb upstream 1000 false Bd3: 41543981-41544980 Brachypodium distachyon
Bradi3g39540 1.0kb downstream 1.0kb downstream 6608 true Bd3: 41537373-41543980 Brachypodium distachyon
Bradi3g39540 1.0kb downstream 1.0kb downstream 1000 false Bd3: 41537373-41538372 Brachypodium distachyon
Bradi3g39540 2.0kb upstream 2.0kb upstream 7608 true Bd3: 41538373-41545980 Brachypodium distachyon
Bradi3g39540 2.0kb upstream 2.0kb upstream 2000 false Bd3: 41543981-41545980 Brachypodium distachyon
Bradi3g39540 2.0kb downstream 2.0kb downstream 7608 true Bd3: 41536373-41543980 Brachypodium distachyon
Bradi3g39540 2.0kb downstream 2.0kb downstream 2000 false Bd3: 41536373-41538372 Brachypodium distachyon
Bradi3g39540 5.0kb upstream 5.0kb upstream 10608 true Bd3: 41538373-41548980 Brachypodium distachyon
Bradi3g39540 5.0kb upstream 5.0kb upstream 5000 false Bd3: 41543981-41548980 Brachypodium distachyon
Bradi3g39540 5.0kb downstream 5.0kb downstream 10608 true Bd3: 41533373-41543980 Brachypodium distachyon
Bradi3g39540 5.0kb downstream 5.0kb downstream 5000 false Bd3: 41533373-41538372 Brachypodium distachyon
Bradi3g39540 10.0kb upstream 10.0kb upstream 15608 true Bd3: 41538373-41553980 Brachypodium distachyon
Bradi3g39540 10.0kb upstream 10.0kb upstream 10000 false Bd3: 41543981-41553980 Brachypodium distachyon
Bradi3g39540 10.0kb downstream 10.0kb downstream 15608 true Bd3: 41528373-41543980 Brachypodium distachyon
Bradi3g39540 10.0kb downstream 10.0kb downstream 10000 false Bd3: 41528373-41538372 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578966 5269 Grass View MSA
122043983 5273 Angiosperm View MSA
121350683 5274 Embryophyte View MSA
123426661 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.42        
cufflinks 6.459        
cufflinks 12.347     High High
cufflinks 5.671        
cufflinks 4.408        
cufflinks 6.22        
cufflinks 6.005        
cufflinks 4.663        
cufflinks 5.32        
cufflinks 9.286        
cufflinks 4.423        
cufflinks 7.459        
cufflinks 5.682        
cufflinks 2.989       Low
cufflinks 5.06        
cufflinks 6.281        
cufflinks 6.02        
cufflinks 12.524     High High
cufflinks 6.431        
cufflinks 1.436       Low
cufflinks 7.267        
cufflinks 9.617       High
cufflinks 4.29        
cufflinks 5.433        
cufflinks 5.662        
cufflinks 11.718     High High
cufflinks 4.705        
cufflinks 11.719     High High
cufflinks 11.05     High High
cufflinks 10.026       High

0 Strain