Gene : Bradi3g36630 B. distachyon v3.1
Defline:  (1 of 6) PTHR12608 - TRANSMEMBRANE PROTEIN HTP-1 RELATED Genomic Order:  4486
Name:  ? Bradi3g36630 Secondary Identifier:  ? PAC:32821731
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g36630 0.5kb upstream 0.5kb upstream 4473 true Bd3: 38759662-38764134 Brachypodium distachyon
Bradi3g36630 0.5kb upstream 0.5kb upstream 500 false Bd3: 38763635-38764134 Brachypodium distachyon
Bradi3g36630 0.5kb downstream 0.5kb downstream 4473 true Bd3: 38759162-38763634 Brachypodium distachyon
Bradi3g36630 0.5kb downstream 0.5kb downstream 500 false Bd3: 38759162-38759661 Brachypodium distachyon
Bradi3g36630 1.0kb upstream 1.0kb upstream 4973 true Bd3: 38759662-38764634 Brachypodium distachyon
Bradi3g36630 1.0kb upstream 1.0kb upstream 1000 false Bd3: 38763635-38764634 Brachypodium distachyon
Bradi3g36630 1.0kb downstream 1.0kb downstream 4973 true Bd3: 38758662-38763634 Brachypodium distachyon
Bradi3g36630 1.0kb downstream 1.0kb downstream 1000 false Bd3: 38758662-38759661 Brachypodium distachyon
Bradi3g36630 2.0kb upstream 2.0kb upstream 5973 true Bd3: 38759662-38765634 Brachypodium distachyon
Bradi3g36630 2.0kb upstream 2.0kb upstream 2000 false Bd3: 38763635-38765634 Brachypodium distachyon
Bradi3g36630 2.0kb downstream 2.0kb downstream 5973 true Bd3: 38757662-38763634 Brachypodium distachyon
Bradi3g36630 2.0kb downstream 2.0kb downstream 2000 false Bd3: 38757662-38759661 Brachypodium distachyon
Bradi3g36630 5.0kb upstream 5.0kb upstream 8973 true Bd3: 38759662-38768634 Brachypodium distachyon
Bradi3g36630 5.0kb upstream 5.0kb upstream 5000 false Bd3: 38763635-38768634 Brachypodium distachyon
Bradi3g36630 5.0kb downstream 5.0kb downstream 8973 true Bd3: 38754662-38763634 Brachypodium distachyon
Bradi3g36630 5.0kb downstream 5.0kb downstream 5000 false Bd3: 38754662-38759661 Brachypodium distachyon
Bradi3g36630 10.0kb upstream 10.0kb upstream 13973 true Bd3: 38759662-38773634 Brachypodium distachyon
Bradi3g36630 10.0kb upstream 10.0kb upstream 10000 false Bd3: 38763635-38773634 Brachypodium distachyon
Bradi3g36630 10.0kb downstream 10.0kb downstream 13973 true Bd3: 38749662-38763634 Brachypodium distachyon
Bradi3g36630 10.0kb downstream 10.0kb downstream 10000 false Bd3: 38749662-38759661 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570496 5269 Grass View MSA
122046225 5273 Angiosperm View MSA
121344721 5274 Embryophyte View MSA
123428725 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.076     High  
cufflinks 6.363       Low
cufflinks 8.627        
cufflinks 7.82        
cufflinks 8.866        
cufflinks 6.48       Low
cufflinks 6.872       Low
cufflinks 7.982        
cufflinks 6.989        
cufflinks 11.477     High  
cufflinks 7.923        
cufflinks 6.585       Low
cufflinks 6.992        
cufflinks 7.132        
cufflinks 9.619     High  
cufflinks 7.475        
cufflinks 10.349        
cufflinks 16.519     High High
cufflinks 10.777        
cufflinks 12.255     High High
cufflinks 15.378     High High
cufflinks 9.995        
cufflinks 7.666        
cufflinks 7.289        
cufflinks 7.244        
cufflinks 10.433        
cufflinks 9.092     High  
cufflinks 11.07     High  
cufflinks 9.823        
cufflinks 9.06        

0 Strain