Gene : Bradi3g36880 B. distachyon v3.1
Defline:  (1 of 1) PTHR21145//PTHR21145:SF2 - CHORISMATE MUTASE Genomic Order:  4515
Name:  ? Bradi3g36880 Secondary Identifier:  ? PAC:32815474
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-3462 Brachypodium distachyon pathologic  
Bdistachyon PWY-6120 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g36880 0.5kb upstream 0.5kb upstream 3725 true Bd3: 38973477-38977201 Brachypodium distachyon
Bradi3g36880 0.5kb upstream 0.5kb upstream 500 false Bd3: 38976702-38977201 Brachypodium distachyon
Bradi3g36880 0.5kb downstream 0.5kb downstream 3725 true Bd3: 38972977-38976701 Brachypodium distachyon
Bradi3g36880 0.5kb downstream 0.5kb downstream 500 false Bd3: 38972977-38973476 Brachypodium distachyon
Bradi3g36880 1.0kb upstream 1.0kb upstream 4225 true Bd3: 38973477-38977701 Brachypodium distachyon
Bradi3g36880 1.0kb upstream 1.0kb upstream 1000 false Bd3: 38976702-38977701 Brachypodium distachyon
Bradi3g36880 1.0kb downstream 1.0kb downstream 4225 true Bd3: 38972477-38976701 Brachypodium distachyon
Bradi3g36880 1.0kb downstream 1.0kb downstream 1000 false Bd3: 38972477-38973476 Brachypodium distachyon
Bradi3g36880 2.0kb upstream 2.0kb upstream 5225 true Bd3: 38973477-38978701 Brachypodium distachyon
Bradi3g36880 2.0kb upstream 2.0kb upstream 2000 false Bd3: 38976702-38978701 Brachypodium distachyon
Bradi3g36880 2.0kb downstream 2.0kb downstream 5225 true Bd3: 38971477-38976701 Brachypodium distachyon
Bradi3g36880 2.0kb downstream 2.0kb downstream 2000 false Bd3: 38971477-38973476 Brachypodium distachyon
Bradi3g36880 5.0kb upstream 5.0kb upstream 8225 true Bd3: 38973477-38981701 Brachypodium distachyon
Bradi3g36880 5.0kb upstream 5.0kb upstream 5000 false Bd3: 38976702-38981701 Brachypodium distachyon
Bradi3g36880 5.0kb downstream 5.0kb downstream 8225 true Bd3: 38968477-38976701 Brachypodium distachyon
Bradi3g36880 5.0kb downstream 5.0kb downstream 5000 false Bd3: 38968477-38973476 Brachypodium distachyon
Bradi3g36880 10.0kb upstream 10.0kb upstream 13225 true Bd3: 38973477-38986701 Brachypodium distachyon
Bradi3g36880 10.0kb upstream 10.0kb upstream 10000 false Bd3: 38976702-38986701 Brachypodium distachyon
Bradi3g36880 10.0kb downstream 10.0kb downstream 13225 true Bd3: 38963477-38976701 Brachypodium distachyon
Bradi3g36880 10.0kb downstream 10.0kb downstream 10000 false Bd3: 38963477-38973476 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580660 5269 Grass View MSA
122050627 5273 Angiosperm View MSA
121312036 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.58        
cufflinks 0.236        
cufflinks 0.374        
cufflinks 0.317        
cufflinks 0.395        
cufflinks 0.362        
cufflinks 0.316        
cufflinks 0.208        
cufflinks 0.274        
cufflinks 0.32        
cufflinks 0.016     Low Low
cufflinks 0.452        
cufflinks 0.48        
cufflinks 0.032     Low Low
cufflinks 1.316       High
cufflinks 0.314        
cufflinks 1.266       High
cufflinks 1.83       High
cufflinks 0.455        
cufflinks 0.032     Low Low
cufflinks 0.452        
cufflinks 0.235        
cufflinks 0.268        
cufflinks 0.276        
cufflinks 0.225        
cufflinks 0.534        
cufflinks 0.449        
cufflinks 0.494        
cufflinks 0.384        
cufflinks 0.682        

0 Strain