Gene : Bradi3g36887 B. distachyon v3.1
Defline:  (1 of 1) PTHR10366//PTHR10366:SF404 - NAD DEPENDENT EPIMERASE/DEHYDRATASE Genomic Order:  4517
Name:  ? Bradi3g36887 Secondary Identifier:  ? PAC:32823586
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-361 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g36887 0.5kb upstream 0.5kb upstream 5751 true Bd3: 38993867-38999617 Brachypodium distachyon
Bradi3g36887 0.5kb upstream 0.5kb upstream 500 false Bd3: 38993867-38994366 Brachypodium distachyon
Bradi3g36887 0.5kb downstream 0.5kb downstream 5751 true Bd3: 38994367-39000117 Brachypodium distachyon
Bradi3g36887 0.5kb downstream 0.5kb downstream 500 false Bd3: 38999618-39000117 Brachypodium distachyon
Bradi3g36887 1.0kb upstream 1.0kb upstream 6251 true Bd3: 38993367-38999617 Brachypodium distachyon
Bradi3g36887 1.0kb upstream 1.0kb upstream 1000 false Bd3: 38993367-38994366 Brachypodium distachyon
Bradi3g36887 1.0kb downstream 1.0kb downstream 6251 true Bd3: 38994367-39000617 Brachypodium distachyon
Bradi3g36887 1.0kb downstream 1.0kb downstream 1000 false Bd3: 38999618-39000617 Brachypodium distachyon
Bradi3g36887 2.0kb upstream 2.0kb upstream 7251 true Bd3: 38992367-38999617 Brachypodium distachyon
Bradi3g36887 2.0kb upstream 2.0kb upstream 2000 false Bd3: 38992367-38994366 Brachypodium distachyon
Bradi3g36887 2.0kb downstream 2.0kb downstream 7251 true Bd3: 38994367-39001617 Brachypodium distachyon
Bradi3g36887 2.0kb downstream 2.0kb downstream 2000 false Bd3: 38999618-39001617 Brachypodium distachyon
Bradi3g36887 5.0kb upstream 5.0kb upstream 10251 true Bd3: 38989367-38999617 Brachypodium distachyon
Bradi3g36887 5.0kb upstream 5.0kb upstream 5000 false Bd3: 38989367-38994366 Brachypodium distachyon
Bradi3g36887 5.0kb downstream 5.0kb downstream 10251 true Bd3: 38994367-39004617 Brachypodium distachyon
Bradi3g36887 5.0kb downstream 5.0kb downstream 5000 false Bd3: 38999618-39004617 Brachypodium distachyon
Bradi3g36887 10.0kb upstream 10.0kb upstream 15251 true Bd3: 38984367-38999617 Brachypodium distachyon
Bradi3g36887 10.0kb upstream 10.0kb upstream 10000 false Bd3: 38984367-38994366 Brachypodium distachyon
Bradi3g36887 10.0kb downstream 10.0kb downstream 15251 true Bd3: 38994367-39009617 Brachypodium distachyon
Bradi3g36887 10.0kb downstream 10.0kb downstream 10000 false Bd3: 38999618-39009617 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041043 5273 Angiosperm View MSA
124576892 5269 Grass View MSA
121350507 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.934     High  
cufflinks 4.38       Low
cufflinks 4.624       Low
cufflinks 6.226        
cufflinks 24.251     High High
cufflinks 4.271       Low
cufflinks 5.746        
cufflinks 24.87     High High
cufflinks 11.297     High  
cufflinks 16.732     High  
cufflinks 3.743       Low
cufflinks 4.291       Low
cufflinks 6.991        
cufflinks 4.886        
cufflinks 20.283     High High
cufflinks 5.347        
cufflinks 15.159     High  
cufflinks 8.107        
cufflinks 9.285        
cufflinks 13.005     High  
cufflinks 43.514     High High
cufflinks 13.844     High  
cufflinks 33.844     High High
cufflinks 12.886     High  
cufflinks 6.394        
cufflinks 4.361       Low
cufflinks 3.498       Low
cufflinks 7.168        
cufflinks 9.835        
cufflinks 10.634        

0 Strain