Gene : Bradi3g41205 B. distachyon v3.1
Defline:  (1 of 4) 2.7.7.49//2.7.7.7//3.1.13.2//3.1.26.13//3.4.23.16 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // // HIV-1 retropepsin / Human immunodeficiency virus type 1 protease Genomic Order:  5080
Name:  ? Bradi3g41205 Secondary Identifier:  ? PAC:32816517
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g41205 0.5kb upstream 0.5kb upstream 3317 true Bd3: 42901556-42904872 Brachypodium distachyon
Bradi3g41205 0.5kb upstream 0.5kb upstream 500 false Bd3: 42904373-42904872 Brachypodium distachyon
Bradi3g41205 0.5kb downstream 0.5kb downstream 3317 true Bd3: 42901056-42904372 Brachypodium distachyon
Bradi3g41205 0.5kb downstream 0.5kb downstream 500 false Bd3: 42901056-42901555 Brachypodium distachyon
Bradi3g41205 1.0kb upstream 1.0kb upstream 3817 true Bd3: 42901556-42905372 Brachypodium distachyon
Bradi3g41205 1.0kb upstream 1.0kb upstream 1000 false Bd3: 42904373-42905372 Brachypodium distachyon
Bradi3g41205 1.0kb downstream 1.0kb downstream 3817 true Bd3: 42900556-42904372 Brachypodium distachyon
Bradi3g41205 1.0kb downstream 1.0kb downstream 1000 false Bd3: 42900556-42901555 Brachypodium distachyon
Bradi3g41205 2.0kb upstream 2.0kb upstream 4817 true Bd3: 42901556-42906372 Brachypodium distachyon
Bradi3g41205 2.0kb upstream 2.0kb upstream 2000 false Bd3: 42904373-42906372 Brachypodium distachyon
Bradi3g41205 2.0kb downstream 2.0kb downstream 4817 true Bd3: 42899556-42904372 Brachypodium distachyon
Bradi3g41205 2.0kb downstream 2.0kb downstream 2000 false Bd3: 42899556-42901555 Brachypodium distachyon
Bradi3g41205 5.0kb upstream 5.0kb upstream 7817 true Bd3: 42901556-42909372 Brachypodium distachyon
Bradi3g41205 5.0kb upstream 5.0kb upstream 5000 false Bd3: 42904373-42909372 Brachypodium distachyon
Bradi3g41205 5.0kb downstream 5.0kb downstream 7817 true Bd3: 42896556-42904372 Brachypodium distachyon
Bradi3g41205 5.0kb downstream 5.0kb downstream 5000 false Bd3: 42896556-42901555 Brachypodium distachyon
Bradi3g41205 10.0kb upstream 10.0kb upstream 12817 true Bd3: 42901556-42914372 Brachypodium distachyon
Bradi3g41205 10.0kb upstream 10.0kb upstream 10000 false Bd3: 42904373-42914372 Brachypodium distachyon
Bradi3g41205 10.0kb downstream 10.0kb downstream 12817 true Bd3: 42891556-42904372 Brachypodium distachyon
Bradi3g41205 10.0kb downstream 10.0kb downstream 10000 false Bd3: 42891556-42901555 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122006147 5273 Angiosperm View MSA
124590470 5269 Grass View MSA
121276265 5274 Embryophyte View MSA
123314552 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.252        
cufflinks 3.156        
cufflinks 3.736        
cufflinks 2.983        
cufflinks 1.829        
cufflinks 2.922        
cufflinks 3.796        
cufflinks 2.682        
cufflinks 2.748        
cufflinks 2.579        
cufflinks 1.06       Low
cufflinks 2.17        
cufflinks 1.995        
cufflinks 0.836       Low
cufflinks 1.648        
cufflinks 2.398        
cufflinks 2.328        
cufflinks 6.109       High
cufflinks 3.371        
cufflinks 0.815       Low
cufflinks 5.265       High
cufflinks 2.517        
cufflinks 2.13        
cufflinks 2.266        
cufflinks 2.426        
cufflinks 3.371        
cufflinks 1.515        
cufflinks 3.467        
cufflinks 2.973        
cufflinks 5.373       High

0 Strain