Gene : Bradi3g41330 B. distachyon v3.1
Defline:  (1 of 2) PTHR11618//PTHR11618:SF23 - TRANSCRIPTION INITIATION FACTOR IIB-RELATED // SUBFAMILY NOT NAMED Genomic Order:  5097
Name:  ? Bradi3g41330 Secondary Identifier:  ? PAC:32816078
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g41330 0.5kb upstream 0.5kb upstream 3143 true Bd3: 43022692-43025834 Brachypodium distachyon
Bradi3g41330 0.5kb upstream 0.5kb upstream 500 false Bd3: 43022692-43023191 Brachypodium distachyon
Bradi3g41330 0.5kb downstream 0.5kb downstream 3143 true Bd3: 43023192-43026334 Brachypodium distachyon
Bradi3g41330 0.5kb downstream 0.5kb downstream 500 false Bd3: 43025835-43026334 Brachypodium distachyon
Bradi3g41330 1.0kb upstream 1.0kb upstream 3643 true Bd3: 43022192-43025834 Brachypodium distachyon
Bradi3g41330 1.0kb upstream 1.0kb upstream 1000 false Bd3: 43022192-43023191 Brachypodium distachyon
Bradi3g41330 1.0kb downstream 1.0kb downstream 3643 true Bd3: 43023192-43026834 Brachypodium distachyon
Bradi3g41330 1.0kb downstream 1.0kb downstream 1000 false Bd3: 43025835-43026834 Brachypodium distachyon
Bradi3g41330 2.0kb upstream 2.0kb upstream 4643 true Bd3: 43021192-43025834 Brachypodium distachyon
Bradi3g41330 2.0kb upstream 2.0kb upstream 2000 false Bd3: 43021192-43023191 Brachypodium distachyon
Bradi3g41330 2.0kb downstream 2.0kb downstream 4643 true Bd3: 43023192-43027834 Brachypodium distachyon
Bradi3g41330 2.0kb downstream 2.0kb downstream 2000 false Bd3: 43025835-43027834 Brachypodium distachyon
Bradi3g41330 5.0kb upstream 5.0kb upstream 7643 true Bd3: 43018192-43025834 Brachypodium distachyon
Bradi3g41330 5.0kb upstream 5.0kb upstream 5000 false Bd3: 43018192-43023191 Brachypodium distachyon
Bradi3g41330 5.0kb downstream 5.0kb downstream 7643 true Bd3: 43023192-43030834 Brachypodium distachyon
Bradi3g41330 5.0kb downstream 5.0kb downstream 5000 false Bd3: 43025835-43030834 Brachypodium distachyon
Bradi3g41330 10.0kb upstream 10.0kb upstream 12643 true Bd3: 43013192-43025834 Brachypodium distachyon
Bradi3g41330 10.0kb upstream 10.0kb upstream 10000 false Bd3: 43013192-43023191 Brachypodium distachyon
Bradi3g41330 10.0kb downstream 10.0kb downstream 12643 true Bd3: 43023192-43035834 Brachypodium distachyon
Bradi3g41330 10.0kb downstream 10.0kb downstream 10000 false Bd3: 43025835-43035834 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569189 5269 Grass View MSA
122042980 5273 Angiosperm View MSA
121346449 5274 Embryophyte View MSA
123427604 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.221       Low
cufflinks 0.417        
cufflinks 0.662       High
cufflinks 0.368        
cufflinks 0.142       Low
cufflinks 0.442        
cufflinks 0.461        
cufflinks 0.529        
cufflinks 0.409        
cufflinks 0.347        
cufflinks 0.582        
cufflinks 0.478        
cufflinks 0.371        
cufflinks 0.382        
cufflinks 0.332        
cufflinks 0.441        
cufflinks 0.133     Low Low
cufflinks 0.417        
cufflinks 0.383        
cufflinks 0.237       Low
cufflinks 0.336        
cufflinks 0.638       High
cufflinks 0.461        
cufflinks 0.372        
cufflinks 0.372        
cufflinks 0.629       High
cufflinks 0.44        
cufflinks 0.733       High
cufflinks 0.771       High
cufflinks 0.571        

0 Strain