Gene : Bradi3g41550 B. distachyon v3.1
Defline:  (1 of 1) K01880 - glycyl-tRNA synthetase (GARS, glyS1) Genomic Order:  5126
Name:  ? Bradi3g41550 Secondary Identifier:  ? PAC:32822704
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g41550 0.5kb upstream 0.5kb upstream 5154 true Bd3: 43233102-43238255 Brachypodium distachyon
Bradi3g41550 0.5kb upstream 0.5kb upstream 500 false Bd3: 43233102-43233601 Brachypodium distachyon
Bradi3g41550 0.5kb downstream 0.5kb downstream 5154 true Bd3: 43233602-43238755 Brachypodium distachyon
Bradi3g41550 0.5kb downstream 0.5kb downstream 500 false Bd3: 43238256-43238755 Brachypodium distachyon
Bradi3g41550 1.0kb upstream 1.0kb upstream 5654 true Bd3: 43232602-43238255 Brachypodium distachyon
Bradi3g41550 1.0kb upstream 1.0kb upstream 1000 false Bd3: 43232602-43233601 Brachypodium distachyon
Bradi3g41550 1.0kb downstream 1.0kb downstream 5654 true Bd3: 43233602-43239255 Brachypodium distachyon
Bradi3g41550 1.0kb downstream 1.0kb downstream 1000 false Bd3: 43238256-43239255 Brachypodium distachyon
Bradi3g41550 2.0kb upstream 2.0kb upstream 6654 true Bd3: 43231602-43238255 Brachypodium distachyon
Bradi3g41550 2.0kb upstream 2.0kb upstream 2000 false Bd3: 43231602-43233601 Brachypodium distachyon
Bradi3g41550 2.0kb downstream 2.0kb downstream 6654 true Bd3: 43233602-43240255 Brachypodium distachyon
Bradi3g41550 2.0kb downstream 2.0kb downstream 2000 false Bd3: 43238256-43240255 Brachypodium distachyon
Bradi3g41550 5.0kb upstream 5.0kb upstream 9654 true Bd3: 43228602-43238255 Brachypodium distachyon
Bradi3g41550 5.0kb upstream 5.0kb upstream 5000 false Bd3: 43228602-43233601 Brachypodium distachyon
Bradi3g41550 5.0kb downstream 5.0kb downstream 9654 true Bd3: 43233602-43243255 Brachypodium distachyon
Bradi3g41550 5.0kb downstream 5.0kb downstream 5000 false Bd3: 43238256-43243255 Brachypodium distachyon
Bradi3g41550 10.0kb upstream 10.0kb upstream 14654 true Bd3: 43223602-43238255 Brachypodium distachyon
Bradi3g41550 10.0kb upstream 10.0kb upstream 10000 false Bd3: 43223602-43233601 Brachypodium distachyon
Bradi3g41550 10.0kb downstream 10.0kb downstream 14654 true Bd3: 43233602-43248255 Brachypodium distachyon
Bradi3g41550 10.0kb downstream 10.0kb downstream 10000 false Bd3: 43238256-43248255 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570250 5269 Grass View MSA
122047180 5273 Angiosperm View MSA
121348773 5274 Embryophyte View MSA
123423981 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.775     High  
cufflinks 57.04     High  
cufflinks 71.109     High High
cufflinks 51.879     High  
cufflinks 25.69     High Low
cufflinks 50.137     High  
cufflinks 48.506     High  
cufflinks 48.646     High  
cufflinks 47.407     High  
cufflinks 48.499     High  
cufflinks 48.333     High  
cufflinks 53.984     High  
cufflinks 43.5     High  
cufflinks 43.729     High  
cufflinks 35.727     High  
cufflinks 54.393     High  
cufflinks 32.406     High  
cufflinks 50.213     High  
cufflinks 36.033     High  
cufflinks 22.208     High Low
cufflinks 33.59     High  
cufflinks 66.481     High High
cufflinks 45.96     High  
cufflinks 45.228     High  
cufflinks 45.759     High  
cufflinks 66.542     High High
cufflinks 46.076     High  
cufflinks 67.075     High High
cufflinks 64.541     High High
cufflinks 44.57     High  

0 Strain