Gene : Bradi3g42080 B. distachyon v3.1
Defline:  (1 of 1) PTHR23322//PTHR23322:SF33 - FAS-ASSOCIATED PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  5194
Name:  ? Bradi3g42080 Secondary Identifier:  ? PAC:32812085
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g42080 0.5kb upstream 0.5kb upstream 5640 true Bd3: 43584157-43589796 Brachypodium distachyon
Bradi3g42080 0.5kb upstream 0.5kb upstream 500 false Bd3: 43589297-43589796 Brachypodium distachyon
Bradi3g42080 0.5kb downstream 0.5kb downstream 5640 true Bd3: 43583657-43589296 Brachypodium distachyon
Bradi3g42080 0.5kb downstream 0.5kb downstream 500 false Bd3: 43583657-43584156 Brachypodium distachyon
Bradi3g42080 1.0kb upstream 1.0kb upstream 6140 true Bd3: 43584157-43590296 Brachypodium distachyon
Bradi3g42080 1.0kb upstream 1.0kb upstream 1000 false Bd3: 43589297-43590296 Brachypodium distachyon
Bradi3g42080 1.0kb downstream 1.0kb downstream 6140 true Bd3: 43583157-43589296 Brachypodium distachyon
Bradi3g42080 1.0kb downstream 1.0kb downstream 1000 false Bd3: 43583157-43584156 Brachypodium distachyon
Bradi3g42080 2.0kb upstream 2.0kb upstream 7140 true Bd3: 43584157-43591296 Brachypodium distachyon
Bradi3g42080 2.0kb upstream 2.0kb upstream 2000 false Bd3: 43589297-43591296 Brachypodium distachyon
Bradi3g42080 2.0kb downstream 2.0kb downstream 7140 true Bd3: 43582157-43589296 Brachypodium distachyon
Bradi3g42080 2.0kb downstream 2.0kb downstream 2000 false Bd3: 43582157-43584156 Brachypodium distachyon
Bradi3g42080 5.0kb upstream 5.0kb upstream 10140 true Bd3: 43584157-43594296 Brachypodium distachyon
Bradi3g42080 5.0kb upstream 5.0kb upstream 5000 false Bd3: 43589297-43594296 Brachypodium distachyon
Bradi3g42080 5.0kb downstream 5.0kb downstream 10140 true Bd3: 43579157-43589296 Brachypodium distachyon
Bradi3g42080 5.0kb downstream 5.0kb downstream 5000 false Bd3: 43579157-43584156 Brachypodium distachyon
Bradi3g42080 10.0kb upstream 10.0kb upstream 15140 true Bd3: 43584157-43599296 Brachypodium distachyon
Bradi3g42080 10.0kb upstream 10.0kb upstream 10000 false Bd3: 43589297-43599296 Brachypodium distachyon
Bradi3g42080 10.0kb downstream 10.0kb downstream 15140 true Bd3: 43574157-43589296 Brachypodium distachyon
Bradi3g42080 10.0kb downstream 10.0kb downstream 10000 false Bd3: 43574157-43584156 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574630 5269 Grass View MSA
122043295 5273 Angiosperm View MSA
121350840 5274 Embryophyte View MSA
123428055 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.188        
cufflinks 4.813        
cufflinks 5.454        
cufflinks 4.306        
cufflinks 3.429       Low
cufflinks 4.378        
cufflinks 4.178        
cufflinks 4.799        
cufflinks 4.512        
cufflinks 4.12        
cufflinks 5.358        
cufflinks 4.832        
cufflinks 4.524        
cufflinks 4.055        
cufflinks 4.528        
cufflinks 4.762        
cufflinks 4.267        
cufflinks 7.924       High
cufflinks 4.404        
cufflinks 3.672        
cufflinks 5.675        
cufflinks 5.774        
cufflinks 4.688        
cufflinks 4.69        
cufflinks 4.082        
cufflinks 5.041        
cufflinks 6.231       High
cufflinks 4.805        
cufflinks 4.944        
cufflinks 5.407        

0 Strain