Gene : Bradi3g42830 B. distachyon v3.1
Defline:  (1 of 1) PTHR31852:SF7 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN Genomic Order:  5281
Name:  ? Bradi3g42830 Secondary Identifier:  ? PAC:32821189
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g42830 0.5kb upstream 0.5kb upstream 1079 true Bd3: 44005906-44006984 Brachypodium distachyon
Bradi3g42830 0.5kb upstream 0.5kb upstream 500 false Bd3: 44005906-44006405 Brachypodium distachyon
Bradi3g42830 0.5kb downstream 0.5kb downstream 1079 true Bd3: 44006406-44007484 Brachypodium distachyon
Bradi3g42830 0.5kb downstream 0.5kb downstream 500 false Bd3: 44006985-44007484 Brachypodium distachyon
Bradi3g42830 1.0kb upstream 1.0kb upstream 1579 true Bd3: 44005406-44006984 Brachypodium distachyon
Bradi3g42830 1.0kb upstream 1.0kb upstream 1000 false Bd3: 44005406-44006405 Brachypodium distachyon
Bradi3g42830 1.0kb downstream 1.0kb downstream 1579 true Bd3: 44006406-44007984 Brachypodium distachyon
Bradi3g42830 1.0kb downstream 1.0kb downstream 1000 false Bd3: 44006985-44007984 Brachypodium distachyon
Bradi3g42830 2.0kb upstream 2.0kb upstream 2579 true Bd3: 44004406-44006984 Brachypodium distachyon
Bradi3g42830 2.0kb upstream 2.0kb upstream 2000 false Bd3: 44004406-44006405 Brachypodium distachyon
Bradi3g42830 2.0kb downstream 2.0kb downstream 2579 true Bd3: 44006406-44008984 Brachypodium distachyon
Bradi3g42830 2.0kb downstream 2.0kb downstream 2000 false Bd3: 44006985-44008984 Brachypodium distachyon
Bradi3g42830 5.0kb upstream 5.0kb upstream 5579 true Bd3: 44001406-44006984 Brachypodium distachyon
Bradi3g42830 5.0kb upstream 5.0kb upstream 5000 false Bd3: 44001406-44006405 Brachypodium distachyon
Bradi3g42830 5.0kb downstream 5.0kb downstream 5579 true Bd3: 44006406-44011984 Brachypodium distachyon
Bradi3g42830 5.0kb downstream 5.0kb downstream 5000 false Bd3: 44006985-44011984 Brachypodium distachyon
Bradi3g42830 10.0kb upstream 10.0kb upstream 10579 true Bd3: 43996406-44006984 Brachypodium distachyon
Bradi3g42830 10.0kb upstream 10.0kb upstream 10000 false Bd3: 43996406-44006405 Brachypodium distachyon
Bradi3g42830 10.0kb downstream 10.0kb downstream 10579 true Bd3: 44006406-44016984 Brachypodium distachyon
Bradi3g42830 10.0kb downstream 10.0kb downstream 10000 false Bd3: 44006985-44016984 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584932 5269 Grass View MSA
122047414 5273 Angiosperm View MSA
121346777 5274 Embryophyte View MSA
123380442 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.722       Low
cufflinks 4.902        
cufflinks 4.567        
cufflinks 4.613        
cufflinks 2.497        
cufflinks 3.366        
cufflinks 5.225        
cufflinks 2.921        
cufflinks 3.487        
cufflinks 6.073        
cufflinks 3.644        
cufflinks 1.723       Low
cufflinks 2.658        
cufflinks 3.177        
cufflinks 1.155       Low
cufflinks 3.687        
cufflinks 5.879        
cufflinks 1.61       Low
cufflinks 8.614       High
cufflinks 1.671       Low
cufflinks 8.024       High
cufflinks 4.06        
cufflinks 3.952        
cufflinks 3.615        
cufflinks 5.41        
cufflinks 5.378        
cufflinks 3.319        
cufflinks 7.378       High
cufflinks 6.712       High
cufflinks 3.662        

0 Strain