Gene : Bradi3g42910 B. distachyon v3.1
Defline:  (1 of 1) PTHR23083//PTHR23083:SF397 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED Genomic Order:  5290
Name:  ? Bradi3g42910 Secondary Identifier:  ? PAC:32816014
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7437 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g42910 0.5kb upstream 0.5kb upstream 8197 true Bd3: 44048145-44056341 Brachypodium distachyon
Bradi3g42910 0.5kb upstream 0.5kb upstream 500 false Bd3: 44048145-44048644 Brachypodium distachyon
Bradi3g42910 0.5kb downstream 0.5kb downstream 8197 true Bd3: 44048645-44056841 Brachypodium distachyon
Bradi3g42910 0.5kb downstream 0.5kb downstream 500 false Bd3: 44056342-44056841 Brachypodium distachyon
Bradi3g42910 1.0kb upstream 1.0kb upstream 8697 true Bd3: 44047645-44056341 Brachypodium distachyon
Bradi3g42910 1.0kb upstream 1.0kb upstream 1000 false Bd3: 44047645-44048644 Brachypodium distachyon
Bradi3g42910 1.0kb downstream 1.0kb downstream 8697 true Bd3: 44048645-44057341 Brachypodium distachyon
Bradi3g42910 1.0kb downstream 1.0kb downstream 1000 false Bd3: 44056342-44057341 Brachypodium distachyon
Bradi3g42910 2.0kb upstream 2.0kb upstream 9697 true Bd3: 44046645-44056341 Brachypodium distachyon
Bradi3g42910 2.0kb upstream 2.0kb upstream 2000 false Bd3: 44046645-44048644 Brachypodium distachyon
Bradi3g42910 2.0kb downstream 2.0kb downstream 9697 true Bd3: 44048645-44058341 Brachypodium distachyon
Bradi3g42910 2.0kb downstream 2.0kb downstream 2000 false Bd3: 44056342-44058341 Brachypodium distachyon
Bradi3g42910 5.0kb upstream 5.0kb upstream 12697 true Bd3: 44043645-44056341 Brachypodium distachyon
Bradi3g42910 5.0kb upstream 5.0kb upstream 5000 false Bd3: 44043645-44048644 Brachypodium distachyon
Bradi3g42910 5.0kb downstream 5.0kb downstream 12697 true Bd3: 44048645-44061341 Brachypodium distachyon
Bradi3g42910 5.0kb downstream 5.0kb downstream 5000 false Bd3: 44056342-44061341 Brachypodium distachyon
Bradi3g42910 10.0kb upstream 10.0kb upstream 17697 true Bd3: 44038645-44056341 Brachypodium distachyon
Bradi3g42910 10.0kb upstream 10.0kb upstream 10000 false Bd3: 44038645-44048644 Brachypodium distachyon
Bradi3g42910 10.0kb downstream 10.0kb downstream 17697 true Bd3: 44048645-44066341 Brachypodium distachyon
Bradi3g42910 10.0kb downstream 10.0kb downstream 10000 false Bd3: 44056342-44066341 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578816 5269 Grass View MSA
122044417 5273 Angiosperm View MSA
121347707 5274 Embryophyte View MSA
123428836 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.147        
cufflinks 10.618     High High
cufflinks 11.129     High High
cufflinks 7.033        
cufflinks 2.831       Low
cufflinks 6.741        
cufflinks 7.312        
cufflinks 7.034        
cufflinks 7.032        
cufflinks 5.741        
cufflinks 4.752        
cufflinks 7.887        
cufflinks 4.742        
cufflinks 3.267       Low
cufflinks 4.933        
cufflinks 7.429        
cufflinks 5.122        
cufflinks 13.201     High High
cufflinks 6.95        
cufflinks 3.397       Low
cufflinks 6.281        
cufflinks 11.556     High High
cufflinks 6.77        
cufflinks 5.474        
cufflinks 5.199        
cufflinks 9.213        
cufflinks 5.439        
cufflinks 8.808        
cufflinks 9.115        
cufflinks 9.736        

0 Strain